miRNA display CGI


Results 41 - 60 of 295 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 32623 0.71 0.270324
Target:  5'- -uCGGACGacgagccgGGCuCGCCCUGGAgcggggccagccCCCCGc -3'
miRNA:   3'- guGCCUGCa-------CCG-GCGGGACCU------------GGGGC- -5'
23559 5' -64.2 NC_005261.1 + 137140 0.71 0.270324
Target:  5'- -uCGGACGacgagccgGGCuCGCCCUGGAgcggggccagccCCCCGc -3'
miRNA:   3'- guGCCUGCa-------CCG-GCGGGACCU------------GGGGC- -5'
23559 5' -64.2 NC_005261.1 + 86872 0.71 0.270324
Target:  5'- -cCGGGCGcGGCgGCCUUGGccgcGCCCUGg -3'
miRNA:   3'- guGCCUGCaCCGgCGGGACC----UGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 13758 0.71 0.276427
Target:  5'- gGCGGcauguACGUGGgCGCCCcugaGGGCaCCCGg -3'
miRNA:   3'- gUGCC-----UGCACCgGCGGGa---CCUG-GGGC- -5'
23559 5' -64.2 NC_005261.1 + 79984 0.71 0.276427
Target:  5'- gGCGcGGCGcGGCaugGCCgaGGACCCCGc -3'
miRNA:   3'- gUGC-CUGCaCCGg--CGGgaCCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 39377 0.71 0.276427
Target:  5'- gGCGGcCGgggagGGCgGCCCUGGcggcgacccgaGCCCCa -3'
miRNA:   3'- gUGCCuGCa----CCGgCGGGACC-----------UGGGGc -5'
23559 5' -64.2 NC_005261.1 + 102763 0.71 0.276427
Target:  5'- cCGCGGACGcGaGCgCGCCCgaGGccucGCCCCGg -3'
miRNA:   3'- -GUGCCUGCaC-CG-GCGGGa-CC----UGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 56094 0.71 0.276427
Target:  5'- gCACGGugGUGGacaaCCGCgCCUcGGACgCCa -3'
miRNA:   3'- -GUGCCugCACC----GGCG-GGA-CCUGgGGc -5'
23559 5' -64.2 NC_005261.1 + 15141 0.71 0.288326
Target:  5'- cCGCGGcgaaaugGCGUGGCCGgCCgccucucgGGGCCUCa -3'
miRNA:   3'- -GUGCC-------UGCACCGGCgGGa-------CCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 98361 0.71 0.288963
Target:  5'- gCGCGGccuGC-UGGCCGUgugCCUGGGCgCCCGg -3'
miRNA:   3'- -GUGCC---UGcACCGGCG---GGACCUG-GGGC- -5'
23559 5' -64.2 NC_005261.1 + 45909 0.71 0.288963
Target:  5'- cCGCGGAUG-GGCCGCgC-GGACCgCGc -3'
miRNA:   3'- -GUGCCUGCaCCGGCGgGaCCUGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 134985 0.71 0.288963
Target:  5'- --aGGACGgGGCCGCCggGGcGCCCCu -3'
miRNA:   3'- gugCCUGCaCCGGCGGgaCC-UGGGGc -5'
23559 5' -64.2 NC_005261.1 + 114990 0.71 0.295397
Target:  5'- gGCGGGCc-GGCCGCCgc-GGCCCCGg -3'
miRNA:   3'- gUGCCUGcaCCGGCGGgacCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 94701 0.71 0.301941
Target:  5'- --aGGACGUGGCCGagCUGGAgCgCCGc -3'
miRNA:   3'- gugCCUGCACCGGCggGACCUgG-GGC- -5'
23559 5' -64.2 NC_005261.1 + 79918 0.71 0.301941
Target:  5'- -uCGGGCGgcugGGCCGCCCccu-CCCCGc -3'
miRNA:   3'- guGCCUGCa---CCGGCGGGaccuGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 29489 0.71 0.301941
Target:  5'- cCGCGGACGccgcgGcGCCGCCgCUGG-CCCgCGc -3'
miRNA:   3'- -GUGCCUGCa----C-CGGCGG-GACCuGGG-GC- -5'
23559 5' -64.2 NC_005261.1 + 44985 0.7 0.308597
Target:  5'- -cCGGGCG-GGCCGCCaCaGGugCUCGa -3'
miRNA:   3'- guGCCUGCaCCGGCGG-GaCCugGGGC- -5'
23559 5' -64.2 NC_005261.1 + 84130 0.7 0.308597
Target:  5'- aGCGGGCGgGGUCGCUggcGGGCCUCGg -3'
miRNA:   3'- gUGCCUGCaCCGGCGGga-CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 122127 0.7 0.308597
Target:  5'- uCGCGuGCGUGGCCGCCgCcGGugCCg- -3'
miRNA:   3'- -GUGCcUGCACCGGCGG-GaCCugGGgc -5'
23559 5' -64.2 NC_005261.1 + 77551 0.7 0.313323
Target:  5'- gUACGGcgccgccgccaGUGGCgccgccgCGCCCUGGcACCCCGg -3'
miRNA:   3'- -GUGCCug---------CACCG-------GCGGGACC-UGGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.