miRNA display CGI


Results 61 - 80 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 128572 0.7 0.315364
Target:  5'- cUugGGugGgcgcCCGCCCgagUGGGCCCCGc -3'
miRNA:   3'- -GugCCugCacc-GGCGGG---ACCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 24054 0.7 0.315364
Target:  5'- cUugGGugGgcgcCCGCCCgagUGGGCCCCGc -3'
miRNA:   3'- -GugCCugCacc-GGCGGG---ACCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 12727 0.7 0.315364
Target:  5'- gCGCGGGCccgccGGCC-CCCUGGGCgggCCCGg -3'
miRNA:   3'- -GUGCCUGca---CCGGcGGGACCUG---GGGC- -5'
23559 5' -64.2 NC_005261.1 + 77809 0.7 0.329233
Target:  5'- aCGCGaGCGcGGCgGCCCcGGGCCCgGg -3'
miRNA:   3'- -GUGCcUGCaCCGgCGGGaCCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 119536 0.7 0.329233
Target:  5'- uCGCcGACGUGcGCCGCaacagCCUgGGGCCCCu -3'
miRNA:   3'- -GUGcCUGCAC-CGGCG-----GGA-CCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 132575 0.7 0.329233
Target:  5'- uGCGaaGACGUcGGCgCGCCCgcGGACgCCCGg -3'
miRNA:   3'- gUGC--CUGCA-CCG-GCGGGa-CCUG-GGGC- -5'
23559 5' -64.2 NC_005261.1 + 73704 0.7 0.334192
Target:  5'- -cCGGACcUGccccccgacgaggaGCCGCCCgcGGGCCCCGa -3'
miRNA:   3'- guGCCUGcAC--------------CGGCGGGa-CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 106903 0.7 0.336334
Target:  5'- aGCGGcGCGcUGGCggcgagcgCGCCCgcGGGCCCCGc -3'
miRNA:   3'- gUGCC-UGC-ACCG--------GCGGGa-CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 2386 0.7 0.336334
Target:  5'- aGCGGcGCGcUGGCggcgagcgCGCCCgcGGGCCCCGc -3'
miRNA:   3'- gUGCC-UGC-ACCG--------GCGGGa-CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 120588 0.7 0.336334
Target:  5'- aGCGu-CGUGGCCGUcgCCUGcGGCCUCGg -3'
miRNA:   3'- gUGCcuGCACCGGCG--GGAC-CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 72400 0.7 0.339206
Target:  5'- uCGCGGcacucgggcagcuucGCGccGCCGCCCgGGcACCCCGa -3'
miRNA:   3'- -GUGCC---------------UGCacCGGCGGGaCC-UGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 116723 0.7 0.343546
Target:  5'- gGCcGACGUcGCCGCCCUGcugaGCCCCu -3'
miRNA:   3'- gUGcCUGCAcCGGCGGGACc---UGGGGc -5'
23559 5' -64.2 NC_005261.1 + 14725 0.7 0.343546
Target:  5'- aGCGGACGcGGCacuGCCgCUGGuGCgCCCGg -3'
miRNA:   3'- gUGCCUGCaCCGg--CGG-GACC-UG-GGGC- -5'
23559 5' -64.2 NC_005261.1 + 33770 0.69 0.350869
Target:  5'- uCGCGGGgccCGcGGCgaGCgCUGGGCCCCGc -3'
miRNA:   3'- -GUGCCU---GCaCCGg-CGgGACCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 27454 0.69 0.350869
Target:  5'- gGCGG-CG-GGCCGCCCcgcgGGGcgggcaggcccuCCCCGg -3'
miRNA:   3'- gUGCCuGCaCCGGCGGGa---CCU------------GGGGC- -5'
23559 5' -64.2 NC_005261.1 + 4186 0.69 0.350869
Target:  5'- gUACGGGcCGUGGCCGgCCaUGG-CCgCGa -3'
miRNA:   3'- -GUGCCU-GCACCGGCgGG-ACCuGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 7953 0.69 0.350869
Target:  5'- uGCGGGCGUGGCgggggCGCgCgGGACgCCCc -3'
miRNA:   3'- gUGCCUGCACCG-----GCGgGaCCUG-GGGc -5'
23559 5' -64.2 NC_005261.1 + 30622 0.69 0.350869
Target:  5'- gCACGGACGcUGugcccgcuGCCGUCCUgcgGGACCCgGc -3'
miRNA:   3'- -GUGCCUGC-AC--------CGGCGGGA---CCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 131971 0.69 0.350869
Target:  5'- gGCGG-CG-GGCCGCCCcgcgGGGcgggcaggcccuCCCCGg -3'
miRNA:   3'- gUGCCuGCaCCGGCGGGa---CCU------------GGGGC- -5'
23559 5' -64.2 NC_005261.1 + 8041 0.69 0.358303
Target:  5'- gGCGGugGUGGCCGucagcuCCCUGcugccGGCgCCGc -3'
miRNA:   3'- gUGCCugCACCGGC------GGGAC-----CUGgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.