Results 61 - 80 of 295 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23559 | 5' | -64.2 | NC_005261.1 | + | 92166 | 0.72 | 0.240326 |
Target: 5'- cCACGaGGCGgcgcccuucccGCUGCCCUGGACCCUc -3' miRNA: 3'- -GUGC-CUGCac---------CGGCGGGACCUGGGGc -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 121926 | 0.72 | 0.241427 |
Target: 5'- --aGGGCccGGCCGCCgCUGGGCCCg- -3' miRNA: 3'- gugCCUGcaCCGGCGG-GACCUGGGgc -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 98361 | 0.71 | 0.288963 |
Target: 5'- gCGCGGccuGC-UGGCCGUgugCCUGGGCgCCCGg -3' miRNA: 3'- -GUGCC---UGcACCGGCG---GGACCUG-GGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 45909 | 0.71 | 0.288963 |
Target: 5'- cCGCGGAUG-GGCCGCgC-GGACCgCGc -3' miRNA: 3'- -GUGCCUGCaCCGGCGgGaCCUGGgGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 79918 | 0.71 | 0.301941 |
Target: 5'- -uCGGGCGgcugGGCCGCCCccu-CCCCGc -3' miRNA: 3'- guGCCUGCa---CCGGCGGGaccuGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 29489 | 0.71 | 0.301941 |
Target: 5'- cCGCGGACGccgcgGcGCCGCCgCUGG-CCCgCGc -3' miRNA: 3'- -GUGCCUGCa----C-CGGCGG-GACCuGGG-GC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 122127 | 0.7 | 0.308597 |
Target: 5'- uCGCGuGCGUGGCCGCCgCcGGugCCg- -3' miRNA: 3'- -GUGCcUGCACCGGCGG-GaCCugGGgc -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 128572 | 0.7 | 0.315364 |
Target: 5'- cUugGGugGgcgcCCGCCCgagUGGGCCCCGc -3' miRNA: 3'- -GugCCugCacc-GGCGGG---ACCUGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 119536 | 0.7 | 0.329233 |
Target: 5'- uCGCcGACGUGcGCCGCaacagCCUgGGGCCCCu -3' miRNA: 3'- -GUGcCUGCAC-CGGCG-----GGA-CCUGGGGc -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 77809 | 0.7 | 0.329233 |
Target: 5'- aCGCGaGCGcGGCgGCCCcGGGCCCgGg -3' miRNA: 3'- -GUGCcUGCaCCGgCGGGaCCUGGGgC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 15141 | 0.71 | 0.288326 |
Target: 5'- cCGCGGcgaaaugGCGUGGCCGgCCgccucucgGGGCCUCa -3' miRNA: 3'- -GUGCC-------UGCACCGGCgGGa-------CCUGGGGc -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 79984 | 0.71 | 0.276427 |
Target: 5'- gGCGcGGCGcGGCaugGCCgaGGACCCCGc -3' miRNA: 3'- gUGC-CUGCaCCGg--CGGgaCCUGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 30211 | 0.72 | 0.241427 |
Target: 5'- aCGCGGACGUGcuGCCGCUgCUGGGgcugCCCGa -3' miRNA: 3'- -GUGCCUGCAC--CGGCGG-GACCUg---GGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 32252 | 0.72 | 0.246993 |
Target: 5'- uCGCGGGCGgcgucgacGCCGCgCUGGGCgCCGa -3' miRNA: 3'- -GUGCCUGCac------CGGCGgGACCUGgGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 20194 | 0.72 | 0.258443 |
Target: 5'- gCGCGGGCGUcGCgGCC--GGGCCCCGc -3' miRNA: 3'- -GUGCCUGCAcCGgCGGgaCCUGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 16963 | 0.71 | 0.26433 |
Target: 5'- -cCGGGC--GGCCGCCCcgucugcggcGGACCCCGa -3' miRNA: 3'- guGCCUGcaCCGGCGGGa---------CCUGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 63872 | 0.71 | 0.270324 |
Target: 5'- gGCGGACGcGGCCGCCCcuuccGCCgCCGc -3' miRNA: 3'- gUGCCUGCaCCGGCGGGacc--UGG-GGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 137140 | 0.71 | 0.270324 |
Target: 5'- -uCGGACGacgagccgGGCuCGCCCUGGAgcggggccagccCCCCGc -3' miRNA: 3'- guGCCUGCa-------CCG-GCGGGACCU------------GGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 13758 | 0.71 | 0.276427 |
Target: 5'- gGCGGcauguACGUGGgCGCCCcugaGGGCaCCCGg -3' miRNA: 3'- gUGCC-----UGCACCgGCGGGa---CCUG-GGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 56094 | 0.71 | 0.276427 |
Target: 5'- gCACGGugGUGGacaaCCGCgCCUcGGACgCCa -3' miRNA: 3'- -GUGCCugCACC----GGCG-GGA-CCUGgGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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