miRNA display CGI


Results 61 - 80 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 31072 0.69 0.376588
Target:  5'- gACGGagGCGcUGGCCGCCUccauggccgcggccgUGGGCgCCGu -3'
miRNA:   3'- gUGCC--UGC-ACCGGCGGG---------------ACCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 31197 0.73 0.205346
Target:  5'- aCGCGGcGCGUGGCgCGCCCUGcuCCuuGg -3'
miRNA:   3'- -GUGCC-UGCACCG-GCGGGACcuGGggC- -5'
23559 5' -64.2 NC_005261.1 + 31353 0.67 0.45572
Target:  5'- gGCGGcGCGUGGCCuggaugucGCagaucgcGGACCCCGa -3'
miRNA:   3'- gUGCC-UGCACCGG--------CGgga----CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 31683 0.69 0.365086
Target:  5'- cCGCGGcGCGgcggcGGCugaucgugaucgaCGCCgUGGACCCCGc -3'
miRNA:   3'- -GUGCC-UGCa----CCG-------------GCGGgACCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 31788 0.76 0.127002
Target:  5'- gCGCGGACGUGGCCGaCUgggcgggcgUGGACCgCGg -3'
miRNA:   3'- -GUGCCUGCACCGGCgGG---------ACCUGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 31964 0.67 0.491241
Target:  5'- aCACGG---UGGCCacGCgCCUGGGCCCgCGc -3'
miRNA:   3'- -GUGCCugcACCGG--CG-GGACCUGGG-GC- -5'
23559 5' -64.2 NC_005261.1 + 32252 0.72 0.246993
Target:  5'- uCGCGGGCGgcgucgacGCCGCgCUGGGCgCCGa -3'
miRNA:   3'- -GUGCCUGCac------CGGCGgGACCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 32623 0.71 0.270324
Target:  5'- -uCGGACGacgagccgGGCuCGCCCUGGAgcggggccagccCCCCGc -3'
miRNA:   3'- guGCCUGCa-------CCG-GCGGGACCU------------GGGGC- -5'
23559 5' -64.2 NC_005261.1 + 33054 0.67 0.491241
Target:  5'- cCGCGGcgGCGgcgGGCC-CCgUGGACgCCGc -3'
miRNA:   3'- -GUGCC--UGCa--CCGGcGGgACCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 33197 0.79 0.086168
Target:  5'- gGCGGGgGUGGgagcgggagaggacaCCGCCCUGGcGCCCCGa -3'
miRNA:   3'- gUGCCUgCACC---------------GGCGGGACC-UGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 33510 0.66 0.537342
Target:  5'- cCAgGGGCGgcGGCgGCaCCgcuGGCCCCGg -3'
miRNA:   3'- -GUgCCUGCa-CCGgCG-GGac-CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 33612 0.69 0.364328
Target:  5'- gCGCGGGCGgcggggcccgggGGCgCGCCCcGcACCCCGc -3'
miRNA:   3'- -GUGCCUGCa-----------CCG-GCGGGaCcUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 33770 0.69 0.350869
Target:  5'- uCGCGGGgccCGcGGCgaGCgCUGGGCCCCGc -3'
miRNA:   3'- -GUGCCU---GCaCCGg-CGgGACCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 34077 0.66 0.537342
Target:  5'- cCGCGGACGgcgcggUGGCCGaCCUGGcggCCGa -3'
miRNA:   3'- -GUGCCUGC------ACCGGCgGGACCuggGGC- -5'
23559 5' -64.2 NC_005261.1 + 34139 0.68 0.438486
Target:  5'- gCGCGGAgCGccGCCGCCCUGu-CCgCCGa -3'
miRNA:   3'- -GUGCCU-GCacCGGCGGGACcuGG-GGC- -5'
23559 5' -64.2 NC_005261.1 + 34534 0.66 0.518702
Target:  5'- gCugGGugACGUGGCCGCUauaaacGGGCgCUCGg -3'
miRNA:   3'- -GugCC--UGCACCGGCGGga----CCUG-GGGC- -5'
23559 5' -64.2 NC_005261.1 + 34665 0.72 0.230609
Target:  5'- gCGCGGGCGgcggcGGCaCGgggcCCCUGGGCCCgGg -3'
miRNA:   3'- -GUGCCUGCa----CCG-GC----GGGACCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 34722 0.66 0.537342
Target:  5'- cCGCGGACGccGCCGUCC-GcGGCgCCGa -3'
miRNA:   3'- -GUGCCUGCacCGGCGGGaC-CUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 35131 0.69 0.365846
Target:  5'- cCGgGGGCGcUGGCCGggCUGGGCCCgGc -3'
miRNA:   3'- -GUgCCUGC-ACCGGCggGACCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 35791 0.78 0.091978
Target:  5'- cCGCGGGCGccaUGGCgcgggaCGgCCUGGACCCCGg -3'
miRNA:   3'- -GUGCCUGC---ACCG------GCgGGACCUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.