miRNA display CGI


Results 41 - 60 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 22747 0.67 0.485829
Target:  5'- gCGCgGGGCGgcGGCgGCCCacgcgucugggggcGGGCCCCGc -3'
miRNA:   3'- -GUG-CCUGCa-CCGgCGGGa-------------CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 23037 0.68 0.413351
Target:  5'- gCACGGGCGcugGGCCGUgCUGaagcgcGugCCCa -3'
miRNA:   3'- -GUGCCUGCa--CCGGCGgGAC------CugGGGc -5'
23559 5' -64.2 NC_005261.1 + 24054 0.7 0.315364
Target:  5'- cUugGGugGgcgcCCGCCCgagUGGGCCCCGc -3'
miRNA:   3'- -GugCCugCacc-GGCGGG---ACCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 25264 0.72 0.235966
Target:  5'- gGCGGugGcGGCCGCCgUGGACagCGc -3'
miRNA:   3'- gUGCCugCaCCGGCGGgACCUGggGC- -5'
23559 5' -64.2 NC_005261.1 + 27454 0.69 0.350869
Target:  5'- gGCGG-CG-GGCCGCCCcgcgGGGcgggcaggcccuCCCCGg -3'
miRNA:   3'- gUGCCuGCaCCGGCGGGa---CCU------------GGGGC- -5'
23559 5' -64.2 NC_005261.1 + 28354 0.67 0.491241
Target:  5'- --gGGGCGc--CCGCCCgcGGGCCCCGc -3'
miRNA:   3'- gugCCUGCaccGGCGGGa-CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 28849 0.66 0.506723
Target:  5'- gGCGGccguCGUGGCCgccGCCCUugaggcugcggcgcGGACgCCGc -3'
miRNA:   3'- gUGCCu---GCACCGG---CGGGA--------------CCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 28889 0.67 0.45572
Target:  5'- gACGGcgACGcGGCCGCC---GACCCCGc -3'
miRNA:   3'- gUGCC--UGCaCCGGCGGgacCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 29251 0.69 0.389123
Target:  5'- cCGCGcGACG-GGCCGCCgccgCUGGAgggCCCGc -3'
miRNA:   3'- -GUGC-CUGCaCCGGCGG----GACCUg--GGGC- -5'
23559 5' -64.2 NC_005261.1 + 29297 0.8 0.066246
Target:  5'- aCGCGGcguGCGUGGgCGUgCUGGGCCCCGa -3'
miRNA:   3'- -GUGCC---UGCACCgGCGgGACCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 29489 0.71 0.301941
Target:  5'- cCGCGGACGccgcgGcGCCGCCgCUGG-CCCgCGc -3'
miRNA:   3'- -GUGCCUGCa----C-CGGCGG-GACCuGGG-GC- -5'
23559 5' -64.2 NC_005261.1 + 29603 0.66 0.564762
Target:  5'- uCGCGGAgauugccgacuCG-GuGCCGCCCgaggcgcUGGugCCCGu -3'
miRNA:   3'- -GUGCCU-----------GCaC-CGGCGGG-------ACCugGGGC- -5'
23559 5' -64.2 NC_005261.1 + 29912 0.66 0.546749
Target:  5'- uCGCGGagcacGCGgcGGCCGUCUgGGACCCg- -3'
miRNA:   3'- -GUGCC-----UGCa-CCGGCGGGaCCUGGGgc -5'
23559 5' -64.2 NC_005261.1 + 30204 0.67 0.453111
Target:  5'- gCGCuGGAgGcGGCCGCgCUGGcggcgcgaaccgugGCCCCGc -3'
miRNA:   3'- -GUG-CCUgCaCCGGCGgGACC--------------UGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 30211 0.72 0.241427
Target:  5'- aCGCGGACGUGcuGCCGCUgCUGGGgcugCCCGa -3'
miRNA:   3'- -GUGCCUGCAC--CGGCGG-GACCUg---GGGC- -5'
23559 5' -64.2 NC_005261.1 + 30544 0.66 0.556209
Target:  5'- --aGGACGaggaagaGGCCGCCgCcgccgGGGCCUCGg -3'
miRNA:   3'- gugCCUGCa------CCGGCGG-Ga----CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 30622 0.69 0.350869
Target:  5'- gCACGGACGcUGugcccgcuGCCGUCCUgcgGGACCCgGc -3'
miRNA:   3'- -GUGCCUGC-AC--------CGGCGGGA---CCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 30694 0.68 0.43001
Target:  5'- aCGgGGACGgGGagGCCCgcgGGAgCCCCGg -3'
miRNA:   3'- -GUgCCUGCaCCggCGGGa--CCU-GGGGC- -5'
23559 5' -64.2 NC_005261.1 + 30902 0.69 0.365846
Target:  5'- -uCGGGCuggGGCCGCCC-GG-CCCCu -3'
miRNA:   3'- guGCCUGca-CCGGCGGGaCCuGGGGc -5'
23559 5' -64.2 NC_005261.1 + 31062 0.66 0.565715
Target:  5'- gGCGGGagcCGccGCUGCCCgcccgcgugcUGGGCCCCa -3'
miRNA:   3'- gUGCCU---GCacCGGCGGG----------ACCUGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.