miRNA display CGI


Results 61 - 80 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 65392 0.66 0.518702
Target:  5'- gCGCuGGACGcccUGGCCgaccGCCUUGcGGCCCuCGa -3'
miRNA:   3'- -GUG-CCUGC---ACCGG----CGGGAC-CUGGG-GC- -5'
23559 5' -64.2 NC_005261.1 + 34534 0.66 0.518702
Target:  5'- gCugGGugACGUGGCCGCUauaaacGGGCgCUCGg -3'
miRNA:   3'- -GugCC--UGCACCGGCGGga----CCUG-GGGC- -5'
23559 5' -64.2 NC_005261.1 + 113044 0.66 0.518702
Target:  5'- gCGCGcGGCGUGGCgCGCCaccgcucgCUGGGCaUCGg -3'
miRNA:   3'- -GUGC-CUGCACCG-GCGG--------GACCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 59797 0.66 0.518702
Target:  5'- gGCGGGCGgcaGGCCGgCgUGGcGCCgCGu -3'
miRNA:   3'- gUGCCUGCa--CCGGCgGgACC-UGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 105123 0.66 0.518702
Target:  5'- gCGCGGGCGcgGGCCGCCggcgcgcgcaGGuCCUCGc -3'
miRNA:   3'- -GUGCCUGCa-CCGGCGGga--------CCuGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 3216 0.66 0.517776
Target:  5'- cCGCGGccGCGUGcgggcccGCCGCgCCaggGGcGCCCCGg -3'
miRNA:   3'- -GUGCC--UGCAC-------CGGCG-GGa--CC-UGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 103511 0.66 0.515927
Target:  5'- cCGCGGACGgcgGcguccgcggcauccGCCGCCUccucGGcCCCCGg -3'
miRNA:   3'- -GUGCCUGCa--C--------------CGGCGGGa---CCuGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 84648 0.66 0.515927
Target:  5'- gCugGGGCGccgccggcccgcGGCCGCuagugcgCCUGGGCCgCGg -3'
miRNA:   3'- -GugCCUGCa-----------CCGGCG-------GGACCUGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 109286 0.66 0.513159
Target:  5'- -cCGGACGcgagGaggaacuuagagauaGCCGCCCUGGcCUCCGc -3'
miRNA:   3'- guGCCUGCa---C---------------CGGCGGGACCuGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 66043 0.66 0.509477
Target:  5'- gGCGGcCacGGCCaGCCCcGGGCCCgCGg -3'
miRNA:   3'- gUGCCuGcaCCGG-CGGGaCCUGGG-GC- -5'
23559 5' -64.2 NC_005261.1 + 90501 0.66 0.509477
Target:  5'- aGCGGGCugcugGUGuCCGCCgaGGAggcCCCCGa -3'
miRNA:   3'- gUGCCUG-----CACcGGCGGgaCCU---GGGGC- -5'
23559 5' -64.2 NC_005261.1 + 42359 0.66 0.509477
Target:  5'- gGCGGGC-UGGCCGCgcaaacguaCUGGugCCgGc -3'
miRNA:   3'- gUGCCUGcACCGGCGg--------GACCugGGgC- -5'
23559 5' -64.2 NC_005261.1 + 69397 0.66 0.509477
Target:  5'- cCGCgGGACGggggGGCCGCCac-GGCCCa- -3'
miRNA:   3'- -GUG-CCUGCa---CCGGCGGgacCUGGGgc -5'
23559 5' -64.2 NC_005261.1 + 66599 0.66 0.509477
Target:  5'- gGCGG-CGUuuucccGCCGCCC-GGGCCCgCGc -3'
miRNA:   3'- gUGCCuGCAc-----CGGCGGGaCCUGGG-GC- -5'
23559 5' -64.2 NC_005261.1 + 6029 0.66 0.509477
Target:  5'- gCGCGGGCG-GGCCcggaCCCaagcaaugcGGGCCCCc -3'
miRNA:   3'- -GUGCCUGCaCCGGc---GGGa--------CCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 60760 0.66 0.508558
Target:  5'- gGCGGGCGggGGCgcggcugcagccgCGCCCcGGGCCUgGc -3'
miRNA:   3'- gUGCCUGCa-CCG-------------GCGGGaCCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 68242 0.66 0.507641
Target:  5'- gCGgGGGCGUguucguggacugccuGGCgCGCCUgcgcccgcgcggcgGGGCCCCGg -3'
miRNA:   3'- -GUgCCUGCA---------------CCG-GCGGGa-------------CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 28849 0.66 0.506723
Target:  5'- gGCGGccguCGUGGCCgccGCCCUugaggcugcggcgcGGACgCCGc -3'
miRNA:   3'- gUGCCu---GCACCGG---CGGGA--------------CCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 133366 0.66 0.506723
Target:  5'- gGCGGccguCGUGGCCgccGCCCUugaggcugcggcgcGGACgCCGc -3'
miRNA:   3'- gUGCCu---GCACCGG---CGGGA--------------CCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 15221 0.67 0.500322
Target:  5'- uCGCGGACGccacGGCCGCggCCguaGuGGCCCUGc -3'
miRNA:   3'- -GUGCCUGCa---CCGGCG--GGa--C-CUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.