miRNA display CGI


Results 81 - 100 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 43277 0.67 0.500322
Target:  5'- --gGGGCGUcgcGGCCGCCUUucccgcgggGGGCgCCGg -3'
miRNA:   3'- gugCCUGCA---CCGGCGGGA---------CCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 98746 0.67 0.500322
Target:  5'- gCGCGGGCGuUGGCCGCgC-GGuugccgcugccGCCgCCGg -3'
miRNA:   3'- -GUGCCUGC-ACCGGCGgGaCC-----------UGG-GGC- -5'
23559 5' -64.2 NC_005261.1 + 58072 0.67 0.500322
Target:  5'- aCGCGGACGgcGG-CGCCa-GGGCCCgCGu -3'
miRNA:   3'- -GUGCCUGCa-CCgGCGGgaCCUGGG-GC- -5'
23559 5' -64.2 NC_005261.1 + 107680 0.67 0.491241
Target:  5'- -cCGGGCGUuGCCGCCgCggcggGGGCgCCGc -3'
miRNA:   3'- guGCCUGCAcCGGCGG-Ga----CCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 135907 0.67 0.491241
Target:  5'- uGCGGGC-UGGUCGCcaacuucacCCUGGuuCCCGu -3'
miRNA:   3'- gUGCCUGcACCGGCG---------GGACCugGGGC- -5'
23559 5' -64.2 NC_005261.1 + 128709 0.67 0.491241
Target:  5'- -uCGGGa--GGCgCGCCC-GGGCCCCGc -3'
miRNA:   3'- guGCCUgcaCCG-GCGGGaCCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 31964 0.67 0.491241
Target:  5'- aCACGG---UGGCCacGCgCCUGGGCCCgCGc -3'
miRNA:   3'- -GUGCCugcACCGG--CG-GGACCUGGG-GC- -5'
23559 5' -64.2 NC_005261.1 + 136482 0.67 0.491241
Target:  5'- aCACGG---UGGCCacGCgCCUGGGCCCgCGc -3'
miRNA:   3'- -GUGCCugcACCGG--CG-GGACCUGGG-GC- -5'
23559 5' -64.2 NC_005261.1 + 63747 0.67 0.491241
Target:  5'- cCGCGGcgGCGUaGGCCGCCgUGuAgCCCa -3'
miRNA:   3'- -GUGCC--UGCA-CCGGCGGgACcUgGGGc -5'
23559 5' -64.2 NC_005261.1 + 117165 0.67 0.491241
Target:  5'- uGCaGGC--GGUCGCCaaGGACCCCGg -3'
miRNA:   3'- gUGcCUGcaCCGGCGGgaCCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 33054 0.67 0.491241
Target:  5'- cCGCGGcgGCGgcgGGCC-CCgUGGACgCCGc -3'
miRNA:   3'- -GUGCC--UGCa--CCGGcGGgACCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 28354 0.67 0.491241
Target:  5'- --gGGGCGc--CCGCCCgcGGGCCCCGc -3'
miRNA:   3'- gugCCUGCaccGGCGGGa-CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 47945 0.67 0.491241
Target:  5'- gACGGggucgACGUGGaaGCCCgacucGGGCUCCa -3'
miRNA:   3'- gUGCC-----UGCACCggCGGGa----CCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 22747 0.67 0.485829
Target:  5'- gCGCgGGGCGgcGGCgGCCCacgcgucugggggcGGGCCCCGc -3'
miRNA:   3'- -GUG-CCUGCa-CCGgCGGGa-------------CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 127264 0.67 0.485829
Target:  5'- gCGCgGGGCGgcGGCgGCCCacgcgucugggggcGGGCCCCGc -3'
miRNA:   3'- -GUG-CCUGCa-CCGgCGGGa-------------CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 59738 0.67 0.482237
Target:  5'- gGCGGcGCGcGGCCGCCCUccaccaggcaGGcCUCCa -3'
miRNA:   3'- gUGCC-UGCaCCGGCGGGA----------CCuGGGGc -5'
23559 5' -64.2 NC_005261.1 + 38456 0.67 0.482237
Target:  5'- aCugGGACccgGGCCGCCUcu--CCCCGu -3'
miRNA:   3'- -GugCCUGca-CCGGCGGGaccuGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 64485 0.67 0.482237
Target:  5'- aGCGGcCGUGGCa--CC-GGACCCCc -3'
miRNA:   3'- gUGCCuGCACCGgcgGGaCCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 98822 0.67 0.482237
Target:  5'- gACGGG-GUGGCCGCUg-GGGCUCgGg -3'
miRNA:   3'- gUGCCUgCACCGGCGGgaCCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 100194 0.67 0.482237
Target:  5'- gGCGGggcaGCGUGGCgGCCagcaGCCCCGc -3'
miRNA:   3'- gUGCC----UGCACCGgCGGgaccUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.