miRNA display CGI


Results 41 - 60 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 85015 0.66 0.537342
Target:  5'- cCGCGGggucGCGcGGCCGCCgc--GCCCCGg -3'
miRNA:   3'- -GUGCC----UGCaCCGGCGGgaccUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 51913 0.66 0.537342
Target:  5'- -cCGGGCGcgcagcGGCCGCggCCUGG-UCCCGc -3'
miRNA:   3'- guGCCUGCa-----CCGGCG--GGACCuGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 104722 0.66 0.537342
Target:  5'- aGCGGugcCGccGCCGcCCCUGGugCUCGc -3'
miRNA:   3'- gUGCCu--GCacCGGC-GGGACCugGGGC- -5'
23559 5' -64.2 NC_005261.1 + 36779 0.66 0.537342
Target:  5'- gGCGG-CGcuggGGCCaGCgCUGGACCgCGc -3'
miRNA:   3'- gUGCCuGCa---CCGG-CGgGACCUGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 34722 0.66 0.537342
Target:  5'- cCGCGGACGccGCCGUCC-GcGGCgCCGa -3'
miRNA:   3'- -GUGCCUGCacCGGCGGGaC-CUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 34077 0.66 0.537342
Target:  5'- cCGCGGACGgcgcggUGGCCGaCCUGGcggCCGa -3'
miRNA:   3'- -GUGCCUGC------ACCGGCgGGACCuggGGC- -5'
23559 5' -64.2 NC_005261.1 + 138027 0.66 0.537342
Target:  5'- cCAgGGGCGgcGGCgGCaCCgcuGGCCCCGg -3'
miRNA:   3'- -GUgCCUGCa-CCGgCG-GGac-CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 40572 0.66 0.537342
Target:  5'- cCGCGGACGccGGCCcCCCaggUGcGGCaCCCGc -3'
miRNA:   3'- -GUGCCUGCa-CCGGcGGG---AC-CUG-GGGC- -5'
23559 5' -64.2 NC_005261.1 + 94159 0.66 0.537342
Target:  5'- cCACGGACGcccGGaaggCGUCCUGGAUcugcugCCCGc -3'
miRNA:   3'- -GUGCCUGCa--CCg---GCGGGACCUG------GGGC- -5'
23559 5' -64.2 NC_005261.1 + 344 0.66 0.537342
Target:  5'- cCAgGGGCGgcGGCgGCaCCgcuGGCCCCGg -3'
miRNA:   3'- -GUgCCUGCa-CCGgCG-GGac-CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 44713 0.66 0.536405
Target:  5'- uCACGGcugacgcGCGcaggGcGCUGCagCUGGGCCCCGa -3'
miRNA:   3'- -GUGCC-------UGCa---C-CGGCGg-GACCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 61172 0.66 0.531725
Target:  5'- gACGGccucuuCGUGGCCGUcgagggcaacagcagCCaGGACUCCGc -3'
miRNA:   3'- gUGCCu-----GCACCGGCG---------------GGaCCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 51543 0.66 0.527991
Target:  5'- gCGCGuACGUgGGCCGCCUcgccgggcuggUGGGCgCCa -3'
miRNA:   3'- -GUGCcUGCA-CCGGCGGG-----------ACCUGgGGc -5'
23559 5' -64.2 NC_005261.1 + 19379 0.66 0.527991
Target:  5'- cCGCGGGCGc-GCCGCCCUccGCgCCGc -3'
miRNA:   3'- -GUGCCUGCacCGGCGGGAccUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 68068 0.66 0.527991
Target:  5'- gCACGGugGUcucGGUCGCCCgcggGGGCggggaggCCGu -3'
miRNA:   3'- -GUGCCugCA---CCGGCGGGa---CCUGg------GGC- -5'
23559 5' -64.2 NC_005261.1 + 120968 0.66 0.527991
Target:  5'- cCGCGGggcGCGU-GCCGCCgcaGGCCCCGu -3'
miRNA:   3'- -GUGCC---UGCAcCGGCGGgacCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 15943 0.66 0.527059
Target:  5'- uGCGGcaGCGgGGCCGCgCUGaugcuacGGCCCUGa -3'
miRNA:   3'- gUGCC--UGCaCCGGCGgGAC-------CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 38027 0.66 0.518702
Target:  5'- aCGCGGGgcUGcUGGCCGCCaCgcuGCCCCGc -3'
miRNA:   3'- -GUGCCU--GC-ACCGGCGG-GaccUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 102745 0.66 0.518702
Target:  5'- --aGGGCGgGuGCCGCggcagGGACCCCGg -3'
miRNA:   3'- gugCCUGCaC-CGGCGgga--CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 34534 0.66 0.518702
Target:  5'- gCugGGugACGUGGCCGCUauaaacGGGCgCUCGg -3'
miRNA:   3'- -GugCC--UGCACCGGCGGga----CCUG-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.