miRNA display CGI


Results 1 - 20 of 295 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 84 0.73 0.19593
Target:  5'- gGCGGgguGCGgGGCgCGCCCccGGGCCCCGc -3'
miRNA:   3'- gUGCC---UGCaCCG-GCGGGa-CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 204 0.66 0.537342
Target:  5'- aGCGGugcCGccGCCGcCCCUGGugCUCGc -3'
miRNA:   3'- gUGCCu--GCacCGGC-GGGACCugGGGC- -5'
23559 5' -64.2 NC_005261.1 + 344 0.66 0.537342
Target:  5'- cCAgGGGCGgcGGCgGCaCCgcuGGCCCCGg -3'
miRNA:   3'- -GUgCCUGCa-CCGgCG-GGac-CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 446 0.69 0.364328
Target:  5'- gCGCGGGCGgcggggcccgggGGCgCGCCCcGcACCCCGc -3'
miRNA:   3'- -GUGCCUGCa-----------CCG-GCGGGaCcUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 1601 0.69 0.397095
Target:  5'- gCGCGGugGcUGGCCGCCUc--GCCCUc -3'
miRNA:   3'- -GUGCCugC-ACCGGCGGGaccUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 2386 0.7 0.336334
Target:  5'- aGCGGcGCGcUGGCggcgagcgCGCCCgcGGGCCCCGc -3'
miRNA:   3'- gUGCC-UGC-ACCG--------GCGGGa-CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 2613 0.66 0.565715
Target:  5'- gGCGG-CGgGGCCGCCgggcggcaUGGGgCCCa -3'
miRNA:   3'- gUGCCuGCaCCGGCGGg-------ACCUgGGGc -5'
23559 5' -64.2 NC_005261.1 + 2688 0.68 0.405172
Target:  5'- gGCGGcGCGccggcuuuUGGCCGgcgccgggcCCCUGG-CCCCGg -3'
miRNA:   3'- gUGCC-UGC--------ACCGGC---------GGGACCuGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 2748 0.68 0.438486
Target:  5'- cCGCGG-CG-GGCCGUCgCggcGGGCCUCGa -3'
miRNA:   3'- -GUGCCuGCaCCGGCGG-Ga--CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 3216 0.66 0.517776
Target:  5'- cCGCGGccGCGUGcgggcccGCCGCgCCaggGGcGCCCCGg -3'
miRNA:   3'- -GUGCC--UGCAC-------CGGCG-GGa--CC-UGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 3371 0.66 0.556209
Target:  5'- gCGgGGGCGcGGgCGCCUUGu-CCCCGu -3'
miRNA:   3'- -GUgCCUGCaCCgGCGGGACcuGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 4186 0.69 0.350869
Target:  5'- gUACGGGcCGUGGCCGgCCaUGG-CCgCGa -3'
miRNA:   3'- -GUGCCU-GCACCGGCgGG-ACCuGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 4305 0.67 0.473313
Target:  5'- cCGCGGccgccgcguagcGCGcGGCCGCCUcgcGGAUCUCGg -3'
miRNA:   3'- -GUGCC------------UGCaCCGGCGGGa--CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 4957 0.67 0.464473
Target:  5'- gGCGGGCGccGG-CGCCCUGGuACUCgCGc -3'
miRNA:   3'- gUGCCUGCa-CCgGCGGGACC-UGGG-GC- -5'
23559 5' -64.2 NC_005261.1 + 6029 0.66 0.509477
Target:  5'- gCGCGGGCG-GGCCcggaCCCaagcaaugcGGGCCCCc -3'
miRNA:   3'- -GUGCCUGCaCCGGc---GGGa--------CCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 7953 0.69 0.350869
Target:  5'- uGCGGGCGUGGCgggggCGCgCgGGACgCCCc -3'
miRNA:   3'- gUGCCUGCACCG-----GCGgGaCCUG-GGGc -5'
23559 5' -64.2 NC_005261.1 + 8041 0.69 0.358303
Target:  5'- gGCGGugGUGGCCGucagcuCCCUGcugccGGCgCCGc -3'
miRNA:   3'- gUGCCugCACCGGC------GGGAC-----CUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 10257 0.67 0.45485
Target:  5'- cCGCGGGCcUGGCgccuucUGCCCUGaGgacuggcGCCCCGa -3'
miRNA:   3'- -GUGCCUGcACCG------GCGGGAC-C-------UGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 10351 0.69 0.378918
Target:  5'- gACGGGCGccGGCgcgacucccgcucgUGCCCUGGcgccgcgaccGCCCCGu -3'
miRNA:   3'- gUGCCUGCa-CCG--------------GCGGGACC----------UGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 10497 0.69 0.388332
Target:  5'- -cCGGcuuuugcGCGcGGCCGCCgCUgcGGGCCCCGc -3'
miRNA:   3'- guGCC-------UGCaCCGGCGG-GA--CCUGGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.