Results 1 - 20 of 295 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23559 | 5' | -64.2 | NC_005261.1 | + | 84 | 0.73 | 0.19593 |
Target: 5'- gGCGGgguGCGgGGCgCGCCCccGGGCCCCGc -3' miRNA: 3'- gUGCC---UGCaCCG-GCGGGa-CCUGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 204 | 0.66 | 0.537342 |
Target: 5'- aGCGGugcCGccGCCGcCCCUGGugCUCGc -3' miRNA: 3'- gUGCCu--GCacCGGC-GGGACCugGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 344 | 0.66 | 0.537342 |
Target: 5'- cCAgGGGCGgcGGCgGCaCCgcuGGCCCCGg -3' miRNA: 3'- -GUgCCUGCa-CCGgCG-GGac-CUGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 446 | 0.69 | 0.364328 |
Target: 5'- gCGCGGGCGgcggggcccgggGGCgCGCCCcGcACCCCGc -3' miRNA: 3'- -GUGCCUGCa-----------CCG-GCGGGaCcUGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 1601 | 0.69 | 0.397095 |
Target: 5'- gCGCGGugGcUGGCCGCCUc--GCCCUc -3' miRNA: 3'- -GUGCCugC-ACCGGCGGGaccUGGGGc -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 2386 | 0.7 | 0.336334 |
Target: 5'- aGCGGcGCGcUGGCggcgagcgCGCCCgcGGGCCCCGc -3' miRNA: 3'- gUGCC-UGC-ACCG--------GCGGGa-CCUGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 2613 | 0.66 | 0.565715 |
Target: 5'- gGCGG-CGgGGCCGCCgggcggcaUGGGgCCCa -3' miRNA: 3'- gUGCCuGCaCCGGCGGg-------ACCUgGGGc -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 2688 | 0.68 | 0.405172 |
Target: 5'- gGCGGcGCGccggcuuuUGGCCGgcgccgggcCCCUGG-CCCCGg -3' miRNA: 3'- gUGCC-UGC--------ACCGGC---------GGGACCuGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 2748 | 0.68 | 0.438486 |
Target: 5'- cCGCGG-CG-GGCCGUCgCggcGGGCCUCGa -3' miRNA: 3'- -GUGCCuGCaCCGGCGG-Ga--CCUGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 3216 | 0.66 | 0.517776 |
Target: 5'- cCGCGGccGCGUGcgggcccGCCGCgCCaggGGcGCCCCGg -3' miRNA: 3'- -GUGCC--UGCAC-------CGGCG-GGa--CC-UGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 3371 | 0.66 | 0.556209 |
Target: 5'- gCGgGGGCGcGGgCGCCUUGu-CCCCGu -3' miRNA: 3'- -GUgCCUGCaCCgGCGGGACcuGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 4186 | 0.69 | 0.350869 |
Target: 5'- gUACGGGcCGUGGCCGgCCaUGG-CCgCGa -3' miRNA: 3'- -GUGCCU-GCACCGGCgGG-ACCuGGgGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 4305 | 0.67 | 0.473313 |
Target: 5'- cCGCGGccgccgcguagcGCGcGGCCGCCUcgcGGAUCUCGg -3' miRNA: 3'- -GUGCC------------UGCaCCGGCGGGa--CCUGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 4957 | 0.67 | 0.464473 |
Target: 5'- gGCGGGCGccGG-CGCCCUGGuACUCgCGc -3' miRNA: 3'- gUGCCUGCa-CCgGCGGGACC-UGGG-GC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 6029 | 0.66 | 0.509477 |
Target: 5'- gCGCGGGCG-GGCCcggaCCCaagcaaugcGGGCCCCc -3' miRNA: 3'- -GUGCCUGCaCCGGc---GGGa--------CCUGGGGc -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 7953 | 0.69 | 0.350869 |
Target: 5'- uGCGGGCGUGGCgggggCGCgCgGGACgCCCc -3' miRNA: 3'- gUGCCUGCACCG-----GCGgGaCCUG-GGGc -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 8041 | 0.69 | 0.358303 |
Target: 5'- gGCGGugGUGGCCGucagcuCCCUGcugccGGCgCCGc -3' miRNA: 3'- gUGCCugCACCGGC------GGGAC-----CUGgGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 10257 | 0.67 | 0.45485 |
Target: 5'- cCGCGGGCcUGGCgccuucUGCCCUGaGgacuggcGCCCCGa -3' miRNA: 3'- -GUGCCUGcACCG------GCGGGAC-C-------UGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 10351 | 0.69 | 0.378918 |
Target: 5'- gACGGGCGccGGCgcgacucccgcucgUGCCCUGGcgccgcgaccGCCCCGu -3' miRNA: 3'- gUGCCUGCa-CCG--------------GCGGGACC----------UGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 10497 | 0.69 | 0.388332 |
Target: 5'- -cCGGcuuuugcGCGcGGCCGCCgCUgcGGGCCCCGc -3' miRNA: 3'- guGCC-------UGCaCCGGCGG-GA--CCUGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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