miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 121926 0.72 0.241427
Target:  5'- --aGGGCccGGCCGCCgCUGGGCCCg- -3'
miRNA:   3'- gugCCUGcaCCGGCGG-GACCUGGGgc -5'
23559 5' -64.2 NC_005261.1 + 80533 0.73 0.205346
Target:  5'- gAUGGACGaGGCCcugcugGCCCUGuGCCCCGc -3'
miRNA:   3'- gUGCCUGCaCCGG------CGGGACcUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 40684 0.73 0.220202
Target:  5'- gGCGGACG-GGCCgGCaCCgccgGGGCCgCCGa -3'
miRNA:   3'- gUGCCUGCaCCGG-CG-GGa---CCUGG-GGC- -5'
23559 5' -64.2 NC_005261.1 + 54908 0.73 0.220202
Target:  5'- gGCGGGCGgcgugGcGCCGCCCgagcugcacGACCCCGc -3'
miRNA:   3'- gUGCCUGCa----C-CGGCGGGac-------CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 70785 0.73 0.225355
Target:  5'- uGCGGGCGgaccGGCUGCCCuuUGGGCgCUGg -3'
miRNA:   3'- gUGCCUGCa---CCGGCGGG--ACCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 34665 0.72 0.230609
Target:  5'- gCGCGGGCGgcggcGGCaCGgggcCCCUGGGCCCgGg -3'
miRNA:   3'- -GUGCCUGCa----CCG-GC----GGGACCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 25264 0.72 0.235966
Target:  5'- gGCGGugGcGGCCGCCgUGGACagCGc -3'
miRNA:   3'- gUGCCugCaCCGGCGGgACCUGggGC- -5'
23559 5' -64.2 NC_005261.1 + 72821 0.72 0.235966
Target:  5'- cCGCGGACGUggagcugccggGGCCGCCCaac-CCCCGc -3'
miRNA:   3'- -GUGCCUGCA-----------CCGGCGGGaccuGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 92166 0.72 0.240326
Target:  5'- cCACGaGGCGgcgcccuucccGCUGCCCUGGACCCUc -3'
miRNA:   3'- -GUGC-CUGCac---------CGGCGGGACCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 31197 0.73 0.205346
Target:  5'- aCGCGGcGCGUGGCgCGCCCUGcuCCuuGg -3'
miRNA:   3'- -GUGCC-UGCACCG-GCGGGACcuGGggC- -5'
23559 5' -64.2 NC_005261.1 + 104602 0.73 0.19593
Target:  5'- gGCGGgguGCGgGGCgCGCCCccGGGCCCCGc -3'
miRNA:   3'- gUGCC---UGCaCCG-GCGGGa-CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 64788 0.74 0.185571
Target:  5'- aCGCGGACGcGGCCGgCCUGGucgcguacuaccagGCCCgGu -3'
miRNA:   3'- -GUGCCUGCaCCGGCgGGACC--------------UGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 65240 0.79 0.083186
Target:  5'- aCGCGGACGcgcUGGCCGCgCUcgcGGACCCCc -3'
miRNA:   3'- -GUGCCUGC---ACCGGCGgGA---CCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 33197 0.79 0.086168
Target:  5'- gGCGGGgGUGGgagcgggagaggacaCCGCCCUGGcGCCCCGa -3'
miRNA:   3'- gUGCCUgCACC---------------GGCGGGACC-UGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 99528 0.77 0.11508
Target:  5'- gCGCGGGCcUGGCCGgCUUGGGCCCgGc -3'
miRNA:   3'- -GUGCCUGcACCGGCgGGACCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 67373 0.77 0.117959
Target:  5'- cCACGGc---GGCCGCCCUGGACCUgGa -3'
miRNA:   3'- -GUGCCugcaCCGGCGGGACCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 31788 0.76 0.127002
Target:  5'- gCGCGGACGUGGCCGaCUgggcgggcgUGGACCgCGg -3'
miRNA:   3'- -GUGCCUGCACCGGCgGG---------ACCUGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 54084 0.76 0.127002
Target:  5'- gCAgGGGCGUGGCCgagGCCCgccaGcGACCCCGc -3'
miRNA:   3'- -GUgCCUGCACCGG---CGGGa---C-CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 75227 0.76 0.130157
Target:  5'- gCGCGGGCGcGGCCGCCgaGGGCCggCUGg -3'
miRNA:   3'- -GUGCCUGCaCCGGCGGgaCCUGG--GGC- -5'
23559 5' -64.2 NC_005261.1 + 77997 0.74 0.182515
Target:  5'- cCGCGG-CGgaGGCgGCCCUGGgggcGCCCCGc -3'
miRNA:   3'- -GUGCCuGCa-CCGgCGGGACC----UGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.