miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 104722 0.66 0.537342
Target:  5'- aGCGGugcCGccGCCGcCCCUGGugCUCGc -3'
miRNA:   3'- gUGCCu--GCacCGGC-GGGACCugGGGC- -5'
23559 5' -64.2 NC_005261.1 + 133366 0.66 0.506723
Target:  5'- gGCGGccguCGUGGCCgccGCCCUugaggcugcggcgcGGACgCCGc -3'
miRNA:   3'- gUGCCu---GCACCGG---CGGGA--------------CCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 3216 0.66 0.517776
Target:  5'- cCGCGGccGCGUGcgggcccGCCGCgCCaggGGcGCCCCGg -3'
miRNA:   3'- -GUGCC--UGCAC-------CGGCG-GGa--CC-UGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 84648 0.66 0.515927
Target:  5'- gCugGGGCGccgccggcccgcGGCCGCuagugcgCCUGGGCCgCGg -3'
miRNA:   3'- -GugCCUGCa-----------CCGGCG-------GGACCUGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 66599 0.66 0.509477
Target:  5'- gGCGG-CGUuuucccGCCGCCC-GGGCCCgCGc -3'
miRNA:   3'- gUGCCuGCAc-----CGGCGGGaCCUGGG-GC- -5'
23559 5' -64.2 NC_005261.1 + 65392 0.66 0.518702
Target:  5'- gCGCuGGACGcccUGGCCgaccGCCUUGcGGCCCuCGa -3'
miRNA:   3'- -GUG-CCUGC---ACCGG----CGGGAC-CUGGG-GC- -5'
23559 5' -64.2 NC_005261.1 + 344 0.66 0.537342
Target:  5'- cCAgGGGCGgcGGCgGCaCCgcuGGCCCCGg -3'
miRNA:   3'- -GUgCCUGCa-CCGgCG-GGac-CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 34534 0.66 0.518702
Target:  5'- gCugGGugACGUGGCCGCUauaaacGGGCgCUCGg -3'
miRNA:   3'- -GugCC--UGCACCGGCGGga----CCUG-GGGC- -5'
23559 5' -64.2 NC_005261.1 + 138027 0.66 0.537342
Target:  5'- cCAgGGGCGgcGGCgGCaCCgcuGGCCCCGg -3'
miRNA:   3'- -GUgCCUGCa-CCGgCG-GGac-CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 60760 0.66 0.508558
Target:  5'- gGCGGGCGggGGCgcggcugcagccgCGCCCcGGGCCUgGc -3'
miRNA:   3'- gUGCCUGCa-CCG-------------GCGGGaCCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 90501 0.66 0.509477
Target:  5'- aGCGGGCugcugGUGuCCGCCgaGGAggcCCCCGa -3'
miRNA:   3'- gUGCCUG-----CACcGGCGGgaCCU---GGGGC- -5'
23559 5' -64.2 NC_005261.1 + 102745 0.66 0.518702
Target:  5'- --aGGGCGgGuGCCGCggcagGGACCCCGg -3'
miRNA:   3'- gugCCUGCaC-CGGCGgga--CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 34077 0.66 0.537342
Target:  5'- cCGCGGACGgcgcggUGGCCGaCCUGGcggCCGa -3'
miRNA:   3'- -GUGCCUGC------ACCGGCgGGACCuggGGC- -5'
23559 5' -64.2 NC_005261.1 + 19379 0.66 0.527991
Target:  5'- cCGCGGGCGc-GCCGCCCUccGCgCCGc -3'
miRNA:   3'- -GUGCCUGCacCGGCGGGAccUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 51543 0.66 0.527991
Target:  5'- gCGCGuACGUgGGCCGCCUcgccgggcuggUGGGCgCCa -3'
miRNA:   3'- -GUGCcUGCA-CCGGCGGG-----------ACCUGgGGc -5'
23559 5' -64.2 NC_005261.1 + 69397 0.66 0.509477
Target:  5'- cCGCgGGACGggggGGCCGCCac-GGCCCa- -3'
miRNA:   3'- -GUG-CCUGCa---CCGGCGGgacCUGGGgc -5'
23559 5' -64.2 NC_005261.1 + 6029 0.66 0.509477
Target:  5'- gCGCGGGCG-GGCCcggaCCCaagcaaugcGGGCCCCc -3'
miRNA:   3'- -GUGCCUGCaCCGGc---GGGa--------CCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 82995 0.66 0.518702
Target:  5'- gGCGGcuGCGgugcuGCCGCCCUcgccgccucGGGCCgCCGg -3'
miRNA:   3'- gUGCC--UGCac---CGGCGGGA---------CCUGG-GGC- -5'
23559 5' -64.2 NC_005261.1 + 15943 0.66 0.527059
Target:  5'- uGCGGcaGCGgGGCCGCgCUGaugcuacGGCCCUGa -3'
miRNA:   3'- gUGCC--UGCaCCGGCGgGAC-------CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 38027 0.66 0.518702
Target:  5'- aCGCGGGgcUGcUGGCCGCCaCgcuGCCCCGc -3'
miRNA:   3'- -GUGCCU--GC-ACCGGCGG-GaccUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.