Results 1 - 20 of 295 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23559 | 5' | -64.2 | NC_005261.1 | + | 132030 | 1.08 | 0.000669 |
Target: 5'- uCACGGACGUGGCCGCCCUGGACCCCGg -3' miRNA: 3'- -GUGCCUGCACCGGCGGGACCUGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 29297 | 0.8 | 0.066246 |
Target: 5'- aCGCGGcguGCGUGGgCGUgCUGGGCCCCGa -3' miRNA: 3'- -GUGCC---UGCACCgGCGgGACCUGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 131768 | 0.79 | 0.081116 |
Target: 5'- gGCGcGGCG-GGCgCGCCgCUGGGCCCCGa -3' miRNA: 3'- gUGC-CUGCaCCG-GCGG-GACCUGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 65240 | 0.79 | 0.083186 |
Target: 5'- aCGCGGACGcgcUGGCCGCgCUcgcGGACCCCc -3' miRNA: 3'- -GUGCCUGC---ACCGGCGgGA---CCUGGGGc -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 33197 | 0.79 | 0.086168 |
Target: 5'- gGCGGGgGUGGgagcgggagaggacaCCGCCCUGGcGCCCCGa -3' miRNA: 3'- gUGCCUgCACC---------------GGCGGGACC-UGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 35791 | 0.78 | 0.091978 |
Target: 5'- cCGCGGGCGccaUGGCgcgggaCGgCCUGGACCCCGg -3' miRNA: 3'- -GUGCCUGC---ACCG------GCgGGACCUGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 99528 | 0.77 | 0.11508 |
Target: 5'- gCGCGGGCcUGGCCGgCUUGGGCCCgGc -3' miRNA: 3'- -GUGCCUGcACCGGCgGGACCUGGGgC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 67373 | 0.77 | 0.117959 |
Target: 5'- cCACGGc---GGCCGCCCUGGACCUgGa -3' miRNA: 3'- -GUGCCugcaCCGGCGGGACCUGGGgC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 31788 | 0.76 | 0.127002 |
Target: 5'- gCGCGGACGUGGCCGaCUgggcgggcgUGGACCgCGg -3' miRNA: 3'- -GUGCCUGCACCGGCgGG---------ACCUGGgGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 54084 | 0.76 | 0.127002 |
Target: 5'- gCAgGGGCGUGGCCgagGCCCgccaGcGACCCCGc -3' miRNA: 3'- -GUgCCUGCACCGG---CGGGa---C-CUGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 75227 | 0.76 | 0.130157 |
Target: 5'- gCGCGGGCGcGGCCGCCgaGGGCCggCUGg -3' miRNA: 3'- -GUGCCUGCaCCGGCGGgaCCUGG--GGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 104667 | 0.76 | 0.139718 |
Target: 5'- gGCGGGCGUGuGCUGCggcagcgCCUGGGCCaCCGc -3' miRNA: 3'- gUGCCUGCAC-CGGCG-------GGACCUGG-GGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 74819 | 0.75 | 0.161959 |
Target: 5'- gGCGGAgGUGGCCGCCgUgcucgcGGACCUgGg -3' miRNA: 3'- gUGCCUgCACCGGCGGgA------CCUGGGgC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 75985 | 0.75 | 0.165896 |
Target: 5'- -cCGGGCGcGGCCGCCCucgcgcUGGACgCCCu -3' miRNA: 3'- guGCCUGCaCCGGCGGG------ACCUG-GGGc -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 77997 | 0.74 | 0.182515 |
Target: 5'- cCGCGG-CGgaGGCgGCCCUGGgggcGCCCCGc -3' miRNA: 3'- -GUGCCuGCa-CCGgCGGGACC----UGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 64788 | 0.74 | 0.185571 |
Target: 5'- aCGCGGACGcGGCCGgCCUGGucgcguacuaccagGCCCgGu -3' miRNA: 3'- -GUGCCUGCaCCGGCgGGACC--------------UGGGgC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 137767 | 0.73 | 0.19593 |
Target: 5'- gGCGGgguGCGgGGCgCGCCCccGGGCCCCGc -3' miRNA: 3'- gUGCC---UGCaCCG-GCGGGa-CCUGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 84 | 0.73 | 0.19593 |
Target: 5'- gGCGGgguGCGgGGCgCGCCCccGGGCCCCGc -3' miRNA: 3'- gUGCC---UGCaCCG-GCGGGa-CCUGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 104602 | 0.73 | 0.19593 |
Target: 5'- gGCGGgguGCGgGGCgCGCCCccGGGCCCCGc -3' miRNA: 3'- gUGCC---UGCaCCG-GCGGGa-CCUGGGGC- -5' |
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23559 | 5' | -64.2 | NC_005261.1 | + | 80533 | 0.73 | 0.205346 |
Target: 5'- gAUGGACGaGGCCcugcugGCCCUGuGCCCCGc -3' miRNA: 3'- gUGCCUGCaCCGG------CGGGACcUGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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