miRNA display CGI


Results 1 - 20 of 295 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 31062 0.66 0.565715
Target:  5'- gGCGGGagcCGccGCUGCCCgcccgcgugcUGGGCCCCa -3'
miRNA:   3'- gUGCCU---GCacCGGCGGG----------ACCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 66438 0.66 0.565715
Target:  5'- cCACGGGCcG-GGCCGCgCUcagcugcgagcGGGCCgCGg -3'
miRNA:   3'- -GUGCCUG-CaCCGGCGgGA-----------CCUGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 117691 0.66 0.565715
Target:  5'- cCGCGG-CGaGGCCgGCCCUGaGGCCg-- -3'
miRNA:   3'- -GUGCCuGCaCCGG-CGGGAC-CUGGggc -5'
23559 5' -64.2 NC_005261.1 + 97642 0.66 0.565715
Target:  5'- aGCGGGCGcggGuGCCGCaCCUGGGgggCCGg -3'
miRNA:   3'- gUGCCUGCa--C-CGGCG-GGACCUgg-GGC- -5'
23559 5' -64.2 NC_005261.1 + 58388 0.66 0.565715
Target:  5'- aGCGcGGCGgcuaGcGCUGCgCUGGACCgCCGc -3'
miRNA:   3'- gUGC-CUGCa---C-CGGCGgGACCUGG-GGC- -5'
23559 5' -64.2 NC_005261.1 + 135580 0.66 0.565715
Target:  5'- gGCGGGagcCGccGCUGCCCgcccgcgugcUGGGCCCCa -3'
miRNA:   3'- gUGCCU---GCacCGGCGGG----------ACCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 107130 0.66 0.565715
Target:  5'- gGCGG-CGgGGCCGCCgggcggcaUGGGgCCCa -3'
miRNA:   3'- gUGCCuGCaCCGGCGGg-------ACCUgGGGc -5'
23559 5' -64.2 NC_005261.1 + 19544 0.66 0.565715
Target:  5'- cCACGccgcGCGUGcgccagcgcccGCCGCCCUcaGCCCCGa -3'
miRNA:   3'- -GUGCc---UGCAC-----------CGGCGGGAccUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 2613 0.66 0.565715
Target:  5'- gGCGG-CGgGGCCGCCgggcggcaUGGGgCCCa -3'
miRNA:   3'- gUGCCuGCaCCGGCGGg-------ACCUgGGGc -5'
23559 5' -64.2 NC_005261.1 + 58992 0.66 0.565715
Target:  5'- cCACGGGCGgcggugcgccgGGCuCGCCCaGcGGCgCCGc -3'
miRNA:   3'- -GUGCCUGCa----------CCG-GCGGGaC-CUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 62079 0.66 0.565715
Target:  5'- cCACGGcguCGUGcGCCGCCac-GACCuCCa -3'
miRNA:   3'- -GUGCCu--GCAC-CGGCGGgacCUGG-GGc -5'
23559 5' -64.2 NC_005261.1 + 29603 0.66 0.564762
Target:  5'- uCGCGGAgauugccgacuCG-GuGCCGCCCgaggcgcUGGugCCCGu -3'
miRNA:   3'- -GUGCCU-----------GCaC-CGGCGGG-------ACCugGGGC- -5'
23559 5' -64.2 NC_005261.1 + 113557 0.66 0.560006
Target:  5'- gCGCuGGACcgcgagcaguggucgGUGGCCGCCgcgCUGGGCgaccucgcgCCCGg -3'
miRNA:   3'- -GUG-CCUG---------------CACCGGCGG---GACCUG---------GGGC- -5'
23559 5' -64.2 NC_005261.1 + 135061 0.66 0.556209
Target:  5'- --aGGACGaggaagaGGCCGCCgCcgccgGGGCCUCGg -3'
miRNA:   3'- gugCCUGCa------CCGGCGG-Ga----CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 90614 0.66 0.556209
Target:  5'- gGCGGcCGcGGCCGCCCccgcaggGGGCggcuCCCu -3'
miRNA:   3'- gUGCCuGCaCCGGCGGGa------CCUG----GGGc -5'
23559 5' -64.2 NC_005261.1 + 60122 0.66 0.556209
Target:  5'- aGCGGugGggccggGGCCGgggCCUGGGCCg-- -3'
miRNA:   3'- gUGCCugCa-----CCGGCg--GGACCUGGggc -5'
23559 5' -64.2 NC_005261.1 + 3371 0.66 0.556209
Target:  5'- gCGgGGGCGcGGgCGCCUUGu-CCCCGu -3'
miRNA:   3'- -GUgCCUGCaCCgGCGGGACcuGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 110832 0.66 0.556209
Target:  5'- cCGCGGACGaguuuccgcUGcCCGCCCUGGcgaacaGCCgCGc -3'
miRNA:   3'- -GUGCCUGC---------ACcGGCGGGACC------UGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 82646 0.66 0.556209
Target:  5'- gCAUGGGCGacGCCGCCgC-GGACUgCGg -3'
miRNA:   3'- -GUGCCUGCacCGGCGG-GaCCUGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 94420 0.66 0.556209
Target:  5'- cCACGGAg--GGCgCGCCC-GGcGCCCCc -3'
miRNA:   3'- -GUGCCUgcaCCG-GCGGGaCC-UGGGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.