Results 61 - 68 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23560 | 3' | -53.3 | NC_005261.1 | + | 97589 | 0.75 | 0.583414 |
|
Target: 5'- gCGggCGGAGCggGCGgagCGGGCGGAGCGg -3' miRNA: 3'- -GCagGCCUCGa-UGUa--GCUCGUCUUGC- -5' |
|||||||
| 23560 | 3' | -53.3 | NC_005261.1 | + | 109675 | 0.75 | 0.552635 |
|
Target: 5'- gGcCCGGcgGGCcGCGUCGAGCAGGGCc -3' miRNA: 3'- gCaGGCC--UCGaUGUAGCUCGUCUUGc -5' |
|||||||
| 23560 | 3' | -53.3 | NC_005261.1 | + | 5157 | 0.75 | 0.552635 |
|
Target: 5'- gGcCCGGcgGGCcGCGUCGAGCAGGGCc -3' miRNA: 3'- gCaGGCC--UCGaUGUAGCUCGUCUUGc -5' |
|||||||
| 23560 | 3' | -53.3 | NC_005261.1 | + | 31502 | 0.76 | 0.512411 |
|
Target: 5'- gCG-CCGGGGCUGCA-CGAGguGGGCc -3' miRNA: 3'- -GCaGGCCUCGAUGUaGCUCguCUUGc -5' |
|||||||
| 23560 | 3' | -53.3 | NC_005261.1 | + | 37941 | 0.78 | 0.426939 |
|
Target: 5'- gCG-CCGGAGCcGCGUCGAGCGGGu-- -3' miRNA: 3'- -GCaGGCCUCGaUGUAGCUCGUCUugc -5' |
|||||||
| 23560 | 3' | -53.3 | NC_005261.1 | + | 97573 | 0.78 | 0.400369 |
|
Target: 5'- gCGUCgCGGAGCUGCuGUCGAcGCuGGACGu -3' miRNA: 3'- -GCAG-GCCUCGAUG-UAGCU-CGuCUUGC- -5' |
|||||||
| 23560 | 3' | -53.3 | NC_005261.1 | + | 104167 | 0.79 | 0.395183 |
|
Target: 5'- cCGUCCGcGGGCgccgcgcgcggguCGUCGGGCGGGACGg -3' miRNA: 3'- -GCAGGC-CUCGau-----------GUAGCUCGUCUUGC- -5' |
|||||||
| 23560 | 3' | -53.3 | NC_005261.1 | + | 131530 | 1.09 | 0.004782 |
|
Target: 5'- aCGUCCGGAGCUACAUCGAGCAGAACGu -3' miRNA: 3'- -GCAGGCCUCGAUGUAGCUCGUCUUGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home