miRNA display CGI


Results 41 - 60 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 3' -53.3 NC_005261.1 + 75065 0.68 0.917529
Target:  5'- uGUCgCGGAGC-ACGUCGGacaCGGAGCu -3'
miRNA:   3'- gCAG-GCCUCGaUGUAGCUc--GUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 129705 0.68 0.916946
Target:  5'- cCGgggCCGGAggcaggcccgccgGCUGCAgCG-GCAGGGCGg -3'
miRNA:   3'- -GCa--GGCCU-------------CGAUGUaGCuCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 33149 0.68 0.911582
Target:  5'- gGUCCGGGGCgcggaGUCG-GCGGAc-- -3'
miRNA:   3'- gCAGGCCUCGaug--UAGCuCGUCUugc -5'
23560 3' -53.3 NC_005261.1 + 81333 0.68 0.911582
Target:  5'- cCGUCguCGGGGC--CGUCG-GCGGGGCGg -3'
miRNA:   3'- -GCAG--GCCUCGauGUAGCuCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 13682 0.69 0.885369
Target:  5'- ---gCGGGGCgcgcggGCGUgGGGCGGGGCGg -3'
miRNA:   3'- gcagGCCUCGa-----UGUAgCUCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 1727 0.69 0.885369
Target:  5'- uCG-CCGGAGCagGCGUCGGcGCcGAGCu -3'
miRNA:   3'- -GCaGGCCUCGa-UGUAGCU-CGuCUUGc -5'
23560 3' -53.3 NC_005261.1 + 10399 0.69 0.885369
Target:  5'- cCGUCCGcuGCUcgcgGCcgCGAGCGcGAGCGg -3'
miRNA:   3'- -GCAGGCcuCGA----UGuaGCUCGU-CUUGC- -5'
23560 3' -53.3 NC_005261.1 + 53451 0.69 0.863266
Target:  5'- gCGUCgGGAGgU-CGcCGGGCGGGACGc -3'
miRNA:   3'- -GCAGgCCUCgAuGUaGCUCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 1776 0.7 0.85546
Target:  5'- aGUCUGGGGCUGCcgCGuGCcccuGCGa -3'
miRNA:   3'- gCAGGCCUCGAUGuaGCuCGucu-UGC- -5'
23560 3' -53.3 NC_005261.1 + 134615 0.7 0.847443
Target:  5'- gGUCUGGuGCgaacgcgGCGUCGgAGgAGAGCGa -3'
miRNA:   3'- gCAGGCCuCGa------UGUAGC-UCgUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 92467 0.7 0.847443
Target:  5'- uCGUCCGGAugaGCggcACcgCGAGCucgcGGACGg -3'
miRNA:   3'- -GCAGGCCU---CGa--UGuaGCUCGu---CUUGC- -5'
23560 3' -53.3 NC_005261.1 + 61495 0.7 0.830812
Target:  5'- aCGUCCGcGAGC-ACGUCGgccagcugcgGGCAGuuGACGa -3'
miRNA:   3'- -GCAGGC-CUCGaUGUAGC----------UCGUC--UUGC- -5'
23560 3' -53.3 NC_005261.1 + 125404 0.71 0.813434
Target:  5'- aCGuUCCGGAGCgGCG-CGGGCGGcGCu -3'
miRNA:   3'- -GC-AGGCCUCGaUGUaGCUCGUCuUGc -5'
23560 3' -53.3 NC_005261.1 + 107554 0.71 0.795374
Target:  5'- aCGUCCGaGAGCacgGCAgcggCGAaGUAGGGCGc -3'
miRNA:   3'- -GCAGGC-CUCGa--UGUa---GCU-CGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 108174 0.72 0.757499
Target:  5'- gCGUCUGGAGCgcagGCcgCGgccGGCAGGccGCGg -3'
miRNA:   3'- -GCAGGCCUCGa---UGuaGC---UCGUCU--UGC- -5'
23560 3' -53.3 NC_005261.1 + 3657 0.72 0.757499
Target:  5'- gCGUCUGGAGCgcagGCcgCGgccGGCAGGccGCGg -3'
miRNA:   3'- -GCAGGCCUCGa---UGuaGC---UCGUCU--UGC- -5'
23560 3' -53.3 NC_005261.1 + 91212 0.73 0.687178
Target:  5'- cCGUCgCGGGGCUggaccgccGCAUCGcGGCGGcGCGg -3'
miRNA:   3'- -GCAG-GCCUCGA--------UGUAGC-UCGUCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 97617 0.73 0.676867
Target:  5'- nGggCGGAGCggGCGgagCGGGCGGAGCGg -3'
miRNA:   3'- gCagGCCUCGa-UGUa--GCUCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 125809 0.74 0.645743
Target:  5'- uGggCCGGGGCcGCcgCGAGCGGGGCc -3'
miRNA:   3'- gCa-GGCCUCGaUGuaGCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 60077 0.75 0.593755
Target:  5'- gGUCCGcGGGCUGCGU-GGGCAGcAGCa -3'
miRNA:   3'- gCAGGC-CUCGAUGUAgCUCGUC-UUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.