miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 3' -53.3 NC_005261.1 + 125404 0.71 0.813434
Target:  5'- aCGuUCCGGAGCgGCG-CGGGCGGcGCu -3'
miRNA:   3'- -GC-AGGCCUCGaUGUaGCUCGUCuUGc -5'
23560 3' -53.3 NC_005261.1 + 107554 0.71 0.795374
Target:  5'- aCGUCCGaGAGCacgGCAgcggCGAaGUAGGGCGc -3'
miRNA:   3'- -GCAGGC-CUCGa--UGUa---GCU-CGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 3657 0.72 0.757499
Target:  5'- gCGUCUGGAGCgcagGCcgCGgccGGCAGGccGCGg -3'
miRNA:   3'- -GCAGGCCUCGa---UGuaGC---UCGUCU--UGC- -5'
23560 3' -53.3 NC_005261.1 + 97617 0.73 0.676867
Target:  5'- nGggCGGAGCggGCGgagCGGGCGGAGCGg -3'
miRNA:   3'- gCagGCCUCGa-UGUa--GCUCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 39992 0.68 0.928684
Target:  5'- cCG-CCGGcguGCgugaagGCGUaCGAGCAGAACu -3'
miRNA:   3'- -GCaGGCCu--CGa-----UGUA-GCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 76166 0.67 0.938849
Target:  5'- aCG-CCGuGGcGCUGCAguaCGAGCGGGGCc -3'
miRNA:   3'- -GCaGGC-CU-CGAUGUa--GCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 85264 0.67 0.938849
Target:  5'- gCGUCCagaaccacugGGGGUUagGCGUCGGGCucccGGGCGg -3'
miRNA:   3'- -GCAGG----------CCUCGA--UGUAGCUCGu---CUUGC- -5'
23560 3' -53.3 NC_005261.1 + 97673 0.66 0.972815
Target:  5'- gCGUCCgcGGGGCUugGgCGGGgcugcCGGGGCGg -3'
miRNA:   3'- -GCAGG--CCUCGAugUaGCUC-----GUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 125111 0.66 0.969938
Target:  5'- -uUCCGGGGC-GCGcUCGGGUGGuGCGu -3'
miRNA:   3'- gcAGGCCUCGaUGU-AGCUCGUCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 23291 0.66 0.968728
Target:  5'- gCGUCCGuGGGC-ACAgcacccguauggcCGAGCAGAAa- -3'
miRNA:   3'- -GCAGGC-CUCGaUGUa------------GCUCGUCUUgc -5'
23560 3' -53.3 NC_005261.1 + 97241 0.66 0.963543
Target:  5'- gGcCCGGccGGCUGgGUCGcggggucggguGGCGGGACGu -3'
miRNA:   3'- gCaGGCC--UCGAUgUAGC-----------UCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 47882 0.66 0.963543
Target:  5'- gCGUCCGGGGagcgGCggCG-GCGGcGCGa -3'
miRNA:   3'- -GCAGGCCUCga--UGuaGCuCGUCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 24382 0.67 0.952263
Target:  5'- --cCCGGugGGCU-CGUCGgcGGCGGGGCGg -3'
miRNA:   3'- gcaGGCC--UCGAuGUAGC--UCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 27710 0.67 0.952263
Target:  5'- uCG-CCGGAGCccucGCcgCGGGaGGAGCGg -3'
miRNA:   3'- -GCaGGCCUCGa---UGuaGCUCgUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 23981 0.67 0.952263
Target:  5'- -uUCCGGgcgGGCUA-GUCGcGGCGGAGCGc -3'
miRNA:   3'- gcAGGCC---UCGAUgUAGC-UCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 11854 0.67 0.952263
Target:  5'- gCGUUCGcGAGCgcgaGCGUCagcuGCGGGGCGa -3'
miRNA:   3'- -GCAGGC-CUCGa---UGUAGcu--CGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 68113 0.67 0.948033
Target:  5'- uCGggCUGGAGCUGCG-CGGGCcgcGGcGCGg -3'
miRNA:   3'- -GCa-GGCCUCGAUGUaGCUCG---UCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 115625 0.67 0.943563
Target:  5'- aCGUCgCGGcAGCgcaGCGUCGGGgGGAAg- -3'
miRNA:   3'- -GCAG-GCC-UCGa--UGUAGCUCgUCUUgc -5'
23560 3' -53.3 NC_005261.1 + 136596 0.67 0.938849
Target:  5'- aCGcCCGGcGCaGCGUgGAGCGGcGCGc -3'
miRNA:   3'- -GCaGGCCuCGaUGUAgCUCGUCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 50420 0.67 0.938849
Target:  5'- gCGUCgCGGAGCcGC-UCGuGCAGcguGCGc -3'
miRNA:   3'- -GCAG-GCCUCGaUGuAGCuCGUCu--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.