Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23560 | 3' | -53.3 | NC_005261.1 | + | 108174 | 0.72 | 0.757499 |
Target: 5'- gCGUCUGGAGCgcagGCcgCGgccGGCAGGccGCGg -3' miRNA: 3'- -GCAGGCCUCGa---UGuaGC---UCGUCU--UGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 61495 | 0.7 | 0.830812 |
Target: 5'- aCGUCCGcGAGC-ACGUCGgccagcugcgGGCAGuuGACGa -3' miRNA: 3'- -GCAGGC-CUCGaUGUAGC----------UCGUC--UUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 1776 | 0.7 | 0.85546 |
Target: 5'- aGUCUGGGGCUGCcgCGuGCcccuGCGa -3' miRNA: 3'- gCAGGCCUCGAUGuaGCuCGucu-UGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 1727 | 0.69 | 0.885369 |
Target: 5'- uCG-CCGGAGCagGCGUCGGcGCcGAGCu -3' miRNA: 3'- -GCaGGCCUCGa-UGUAGCU-CGuCUUGc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 100631 | 0.68 | 0.927074 |
Target: 5'- --aCCGGAGCUGCAgggaccggcCGugugguaccggggcGGCAGGACGc -3' miRNA: 3'- gcaGGCCUCGAUGUa--------GC--------------UCGUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 134930 | 0.68 | 0.92323 |
Target: 5'- gCGggCCGGGGC-ACcgCGGGCGGAccuggaggaggACGg -3' miRNA: 3'- -GCa-GGCCUCGaUGuaGCUCGUCU-----------UGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 99050 | 0.68 | 0.92323 |
Target: 5'- uCG-CCGGGGCgcgaGUCGGGCccGAGCGc -3' miRNA: 3'- -GCaGGCCUCGaug-UAGCUCGu-CUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 75065 | 0.68 | 0.917529 |
Target: 5'- uGUCgCGGAGC-ACGUCGGacaCGGAGCu -3' miRNA: 3'- gCAG-GCCUCGaUGUAGCUc--GUCUUGc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 33149 | 0.68 | 0.911582 |
Target: 5'- gGUCCGGGGCgcggaGUCG-GCGGAc-- -3' miRNA: 3'- gCAGGCCUCGaug--UAGCuCGUCUugc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 10399 | 0.69 | 0.885369 |
Target: 5'- cCGUCCGcuGCUcgcgGCcgCGAGCGcGAGCGg -3' miRNA: 3'- -GCAGGCcuCGA----UGuaGCUCGU-CUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 11854 | 0.67 | 0.952263 |
Target: 5'- gCGUUCGcGAGCgcgaGCGUCagcuGCGGGGCGa -3' miRNA: 3'- -GCAGGC-CUCGa---UGUAGcu--CGUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 23981 | 0.67 | 0.952263 |
Target: 5'- -uUCCGGgcgGGCUA-GUCGcGGCGGAGCGc -3' miRNA: 3'- gcAGGCC---UCGAUgUAGC-UCGUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 27710 | 0.67 | 0.952263 |
Target: 5'- uCG-CCGGAGCccucGCcgCGGGaGGAGCGg -3' miRNA: 3'- -GCaGGCCUCGa---UGuaGCUCgUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 24382 | 0.67 | 0.952263 |
Target: 5'- --cCCGGugGGCU-CGUCGgcGGCGGGGCGg -3' miRNA: 3'- gcaGGCC--UCGAuGUAGC--UCGUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 47882 | 0.66 | 0.963543 |
Target: 5'- gCGUCCGGGGagcgGCggCG-GCGGcGCGa -3' miRNA: 3'- -GCAGGCCUCga--UGuaGCuCGUCuUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 97241 | 0.66 | 0.963543 |
Target: 5'- gGcCCGGccGGCUGgGUCGcggggucggguGGCGGGACGu -3' miRNA: 3'- gCaGGCC--UCGAUgUAGC-----------UCGUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 23291 | 0.66 | 0.968728 |
Target: 5'- gCGUCCGuGGGC-ACAgcacccguauggcCGAGCAGAAa- -3' miRNA: 3'- -GCAGGC-CUCGaUGUa------------GCUCGUCUUgc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 125111 | 0.66 | 0.969938 |
Target: 5'- -uUCCGGGGC-GCGcUCGGGUGGuGCGu -3' miRNA: 3'- gcAGGCCUCGaUGU-AGCUCGUCuUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 97673 | 0.66 | 0.972815 |
Target: 5'- gCGUCCgcGGGGCUugGgCGGGgcugcCGGGGCGg -3' miRNA: 3'- -GCAGG--CCUCGAugUaGCUC-----GUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 131530 | 1.09 | 0.004782 |
Target: 5'- aCGUCCGGAGCUACAUCGAGCAGAACGu -3' miRNA: 3'- -GCAGGCCUCGAUGUAGCUCGUCUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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