miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 3' -53.3 NC_005261.1 + 53451 0.69 0.863266
Target:  5'- gCGUCgGGAGgU-CGcCGGGCGGGACGc -3'
miRNA:   3'- -GCAGgCCUCgAuGUaGCUCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 13682 0.69 0.885369
Target:  5'- ---gCGGGGCgcgcggGCGUgGGGCGGGGCGg -3'
miRNA:   3'- gcagGCCUCGa-----UGUAgCUCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 10399 0.69 0.885369
Target:  5'- cCGUCCGcuGCUcgcgGCcgCGAGCGcGAGCGg -3'
miRNA:   3'- -GCAGGCcuCGA----UGuaGCUCGU-CUUGC- -5'
23560 3' -53.3 NC_005261.1 + 1727 0.69 0.885369
Target:  5'- uCG-CCGGAGCagGCGUCGGcGCcGAGCu -3'
miRNA:   3'- -GCaGGCCUCGa-UGUAGCU-CGuCUUGc -5'
23560 3' -53.3 NC_005261.1 + 33149 0.68 0.911582
Target:  5'- gGUCCGGGGCgcggaGUCG-GCGGAc-- -3'
miRNA:   3'- gCAGGCCUCGaug--UAGCuCGUCUugc -5'
23560 3' -53.3 NC_005261.1 + 81333 0.68 0.911582
Target:  5'- cCGUCguCGGGGC--CGUCG-GCGGGGCGg -3'
miRNA:   3'- -GCAG--GCCUCGauGUAGCuCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 129705 0.68 0.916946
Target:  5'- cCGgggCCGGAggcaggcccgccgGCUGCAgCG-GCAGGGCGg -3'
miRNA:   3'- -GCa--GGCCU-------------CGAUGUaGCuCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 75065 0.68 0.917529
Target:  5'- uGUCgCGGAGC-ACGUCGGacaCGGAGCu -3'
miRNA:   3'- gCAG-GCCUCGaUGUAGCUc--GUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 93670 0.68 0.92323
Target:  5'- gGUCCGcGGGCgGCggCGccGGCGGGGCGc -3'
miRNA:   3'- gCAGGC-CUCGaUGuaGC--UCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 99050 0.68 0.92323
Target:  5'- uCG-CCGGGGCgcgaGUCGGGCccGAGCGc -3'
miRNA:   3'- -GCaGGCCUCGaug-UAGCUCGu-CUUGC- -5'
23560 3' -53.3 NC_005261.1 + 134930 0.68 0.92323
Target:  5'- gCGggCCGGGGC-ACcgCGGGCGGAccuggaggaggACGg -3'
miRNA:   3'- -GCa-GGCCUCGaUGuaGCUCGUCU-----------UGC- -5'
23560 3' -53.3 NC_005261.1 + 30413 0.68 0.92323
Target:  5'- gCGggCCGGGGC-ACcgCGGGCGGAccuggaggaggACGg -3'
miRNA:   3'- -GCa-GGCCUCGaUGuaGCUCGUCU-----------UGC- -5'
23560 3' -53.3 NC_005261.1 + 100631 0.68 0.927074
Target:  5'- --aCCGGAGCUGCAgggaccggcCGugugguaccggggcGGCAGGACGc -3'
miRNA:   3'- gcaGGCCUCGAUGUa--------GC--------------UCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 122974 0.68 0.928684
Target:  5'- cCG-CCGGGGCgaucGCGgcccacugCGAGCGGGGCc -3'
miRNA:   3'- -GCaGGCCUCGa---UGUa-------GCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 39992 0.68 0.928684
Target:  5'- cCG-CCGGcguGCgugaagGCGUaCGAGCAGAACu -3'
miRNA:   3'- -GCaGGCCu--CGa-----UGUA-GCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 95630 0.68 0.928684
Target:  5'- gGUCCaGGAGCgGCugggCGAGCGcGACGc -3'
miRNA:   3'- gCAGG-CCUCGaUGua--GCUCGUcUUGC- -5'
23560 3' -53.3 NC_005261.1 + 92614 0.68 0.928684
Target:  5'- gCGUgCCGGGGCcccggGCGcgaGAGCGGGACc -3'
miRNA:   3'- -GCA-GGCCUCGa----UGUag-CUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 76166 0.67 0.938849
Target:  5'- aCG-CCGuGGcGCUGCAguaCGAGCGGGGCc -3'
miRNA:   3'- -GCaGGC-CU-CGAUGUa--GCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 50420 0.67 0.938849
Target:  5'- gCGUCgCGGAGCcGC-UCGuGCAGcguGCGc -3'
miRNA:   3'- -GCAG-GCCUCGaUGuAGCuCGUCu--UGC- -5'
23560 3' -53.3 NC_005261.1 + 4907 0.67 0.938849
Target:  5'- gCGUgCCggcaGGAGCUGCG-CGAGCAGccagucguccuuGGCGg -3'
miRNA:   3'- -GCA-GG----CCUCGAUGUaGCUCGUC------------UUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.