miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 3' -53.3 NC_005261.1 + 131530 1.09 0.004782
Target:  5'- aCGUCCGGAGCUACAUCGAGCAGAACGu -3'
miRNA:   3'- -GCAGGCCUCGAUGUAGCUCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 104167 0.79 0.395183
Target:  5'- cCGUCCGcGGGCgccgcgcgcggguCGUCGGGCGGGACGg -3'
miRNA:   3'- -GCAGGC-CUCGau-----------GUAGCUCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 97573 0.78 0.400369
Target:  5'- gCGUCgCGGAGCUGCuGUCGAcGCuGGACGu -3'
miRNA:   3'- -GCAG-GCCUCGAUG-UAGCU-CGuCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 37941 0.78 0.426939
Target:  5'- gCG-CCGGAGCcGCGUCGAGCGGGu-- -3'
miRNA:   3'- -GCaGGCCUCGaUGUAGCUCGUCUugc -5'
23560 3' -53.3 NC_005261.1 + 31502 0.76 0.512411
Target:  5'- gCG-CCGGGGCUGCA-CGAGguGGGCc -3'
miRNA:   3'- -GCaGGCCUCGAUGUaGCUCguCUUGc -5'
23560 3' -53.3 NC_005261.1 + 5157 0.75 0.552635
Target:  5'- gGcCCGGcgGGCcGCGUCGAGCAGGGCc -3'
miRNA:   3'- gCaGGCC--UCGaUGUAGCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 109675 0.75 0.552635
Target:  5'- gGcCCGGcgGGCcGCGUCGAGCAGGGCc -3'
miRNA:   3'- gCaGGCC--UCGaUGUAGCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 97589 0.75 0.583414
Target:  5'- gCGggCGGAGCggGCGgagCGGGCGGAGCGg -3'
miRNA:   3'- -GCagGCCUCGa-UGUa--GCUCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 60077 0.75 0.593755
Target:  5'- gGUCCGcGGGCUGCGU-GGGCAGcAGCa -3'
miRNA:   3'- gCAGGC-CUCGAUGUAgCUCGUC-UUGc -5'
23560 3' -53.3 NC_005261.1 + 125809 0.74 0.645743
Target:  5'- uGggCCGGGGCcGCcgCGAGCGGGGCc -3'
miRNA:   3'- gCa-GGCCUCGaUGuaGCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 97617 0.73 0.676867
Target:  5'- nGggCGGAGCggGCGgagCGGGCGGAGCGg -3'
miRNA:   3'- gCagGCCUCGa-UGUa--GCUCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 91212 0.73 0.687178
Target:  5'- cCGUCgCGGGGCUggaccgccGCAUCGcGGCGGcGCGg -3'
miRNA:   3'- -GCAG-GCCUCGA--------UGUAGC-UCGUCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 3657 0.72 0.757499
Target:  5'- gCGUCUGGAGCgcagGCcgCGgccGGCAGGccGCGg -3'
miRNA:   3'- -GCAGGCCUCGa---UGuaGC---UCGUCU--UGC- -5'
23560 3' -53.3 NC_005261.1 + 108174 0.72 0.757499
Target:  5'- gCGUCUGGAGCgcagGCcgCGgccGGCAGGccGCGg -3'
miRNA:   3'- -GCAGGCCUCGa---UGuaGC---UCGUCU--UGC- -5'
23560 3' -53.3 NC_005261.1 + 107554 0.71 0.795374
Target:  5'- aCGUCCGaGAGCacgGCAgcggCGAaGUAGGGCGc -3'
miRNA:   3'- -GCAGGC-CUCGa--UGUa---GCU-CGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 125404 0.71 0.813434
Target:  5'- aCGuUCCGGAGCgGCG-CGGGCGGcGCu -3'
miRNA:   3'- -GC-AGGCCUCGaUGUaGCUCGUCuUGc -5'
23560 3' -53.3 NC_005261.1 + 61495 0.7 0.830812
Target:  5'- aCGUCCGcGAGC-ACGUCGgccagcugcgGGCAGuuGACGa -3'
miRNA:   3'- -GCAGGC-CUCGaUGUAGC----------UCGUC--UUGC- -5'
23560 3' -53.3 NC_005261.1 + 134615 0.7 0.847443
Target:  5'- gGUCUGGuGCgaacgcgGCGUCGgAGgAGAGCGa -3'
miRNA:   3'- gCAGGCCuCGa------UGUAGC-UCgUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 92467 0.7 0.847443
Target:  5'- uCGUCCGGAugaGCggcACcgCGAGCucgcGGACGg -3'
miRNA:   3'- -GCAGGCCU---CGa--UGuaGCUCGu---CUUGC- -5'
23560 3' -53.3 NC_005261.1 + 1776 0.7 0.85546
Target:  5'- aGUCUGGGGCUGCcgCGuGCcccuGCGa -3'
miRNA:   3'- gCAGGCCUCGAUGuaGCuCGucu-UGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.