miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 3' -53.3 NC_005261.1 + 116371 0.67 0.952263
Target:  5'- gCGUUCGcGAGCgcgaGCGUCagcuGCGGGGCGa -3'
miRNA:   3'- -GCAGGC-CUCGa---UGUAGcu--CGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 75300 0.67 0.952263
Target:  5'- gGUgCGGGGCUGCcugccggUGGGCuAGGGCGc -3'
miRNA:   3'- gCAgGCCUCGAUGua-----GCUCG-UCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 42185 0.67 0.951436
Target:  5'- cCGUCCuGGAGCgggcgggacgcgGCGUUGAGCAcGuGCa -3'
miRNA:   3'- -GCAGG-CCUCGa-----------UGUAGCUCGU-CuUGc -5'
23560 3' -53.3 NC_005261.1 + 68113 0.67 0.948033
Target:  5'- uCGggCUGGAGCUGCG-CGGGCcgcGGcGCGg -3'
miRNA:   3'- -GCa-GGCCUCGAUGUaGCUCG---UCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 34412 0.67 0.948033
Target:  5'- -cUCCGcGAGCUGCuggcggCGGGCGcAACGg -3'
miRNA:   3'- gcAGGC-CUCGAUGua----GCUCGUcUUGC- -5'
23560 3' -53.3 NC_005261.1 + 115625 0.67 0.943563
Target:  5'- aCGUCgCGGcAGCgcaGCGUCGGGgGGAAg- -3'
miRNA:   3'- -GCAG-GCC-UCGa--UGUAGCUCgUCUUgc -5'
23560 3' -53.3 NC_005261.1 + 4907 0.67 0.938849
Target:  5'- gCGUgCCggcaGGAGCUGCG-CGAGCAGccagucguccuuGGCGg -3'
miRNA:   3'- -GCA-GG----CCUCGAUGUaGCUCGUC------------UUGC- -5'
23560 3' -53.3 NC_005261.1 + 136596 0.67 0.938849
Target:  5'- aCGcCCGGcGCaGCGUgGAGCGGcGCGc -3'
miRNA:   3'- -GCaGGCCuCGaUGUAgCUCGUCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 50420 0.67 0.938849
Target:  5'- gCGUCgCGGAGCcGC-UCGuGCAGcguGCGc -3'
miRNA:   3'- -GCAG-GCCUCGaUGuAGCuCGUCu--UGC- -5'
23560 3' -53.3 NC_005261.1 + 85264 0.67 0.938849
Target:  5'- gCGUCCagaaccacugGGGGUUagGCGUCGGGCucccGGGCGg -3'
miRNA:   3'- -GCAGG----------CCUCGA--UGUAGCUCGu---CUUGC- -5'
23560 3' -53.3 NC_005261.1 + 76166 0.67 0.938849
Target:  5'- aCG-CCGuGGcGCUGCAguaCGAGCGGGGCc -3'
miRNA:   3'- -GCaGGC-CU-CGAUGUa--GCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 122974 0.68 0.928684
Target:  5'- cCG-CCGGGGCgaucGCGgcccacugCGAGCGGGGCc -3'
miRNA:   3'- -GCaGGCCUCGa---UGUa-------GCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 39992 0.68 0.928684
Target:  5'- cCG-CCGGcguGCgugaagGCGUaCGAGCAGAACu -3'
miRNA:   3'- -GCaGGCCu--CGa-----UGUA-GCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 92614 0.68 0.928684
Target:  5'- gCGUgCCGGGGCcccggGCGcgaGAGCGGGACc -3'
miRNA:   3'- -GCA-GGCCUCGa----UGUag-CUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 95630 0.68 0.928684
Target:  5'- gGUCCaGGAGCgGCugggCGAGCGcGACGc -3'
miRNA:   3'- gCAGG-CCUCGaUGua--GCUCGUcUUGC- -5'
23560 3' -53.3 NC_005261.1 + 100631 0.68 0.927074
Target:  5'- --aCCGGAGCUGCAgggaccggcCGugugguaccggggcGGCAGGACGc -3'
miRNA:   3'- gcaGGCCUCGAUGUa--------GC--------------UCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 30413 0.68 0.92323
Target:  5'- gCGggCCGGGGC-ACcgCGGGCGGAccuggaggaggACGg -3'
miRNA:   3'- -GCa-GGCCUCGaUGuaGCUCGUCU-----------UGC- -5'
23560 3' -53.3 NC_005261.1 + 99050 0.68 0.92323
Target:  5'- uCG-CCGGGGCgcgaGUCGGGCccGAGCGc -3'
miRNA:   3'- -GCaGGCCUCGaug-UAGCUCGu-CUUGC- -5'
23560 3' -53.3 NC_005261.1 + 134930 0.68 0.92323
Target:  5'- gCGggCCGGGGC-ACcgCGGGCGGAccuggaggaggACGg -3'
miRNA:   3'- -GCa-GGCCUCGaUGuaGCUCGUCU-----------UGC- -5'
23560 3' -53.3 NC_005261.1 + 93670 0.68 0.92323
Target:  5'- gGUCCGcGGGCgGCggCGccGGCGGGGCGc -3'
miRNA:   3'- gCAGGC-CUCGaUGuaGC--UCGUCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.