miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 3' -53.3 NC_005261.1 + 47744 0.66 0.956255
Target:  5'- aGUCgCGGAGCaGCAcgcUGAGCAGGcucucGCGc -3'
miRNA:   3'- gCAG-GCCUCGaUGUa--GCUCGUCU-----UGC- -5'
23560 3' -53.3 NC_005261.1 + 47882 0.66 0.963543
Target:  5'- gCGUCCGGGGagcgGCggCG-GCGGcGCGa -3'
miRNA:   3'- -GCAGGCCUCga--UGuaGCuCGUCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 50420 0.67 0.938849
Target:  5'- gCGUCgCGGAGCcGC-UCGuGCAGcguGCGc -3'
miRNA:   3'- -GCAG-GCCUCGaUGuAGCuCGUCu--UGC- -5'
23560 3' -53.3 NC_005261.1 + 53451 0.69 0.863266
Target:  5'- gCGUCgGGAGgU-CGcCGGGCGGGACGc -3'
miRNA:   3'- -GCAGgCCUCgAuGUaGCUCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 57903 0.66 0.966849
Target:  5'- aGgCCGGGGCcGCgGUCGAGCGcgucuaccguGAGCGc -3'
miRNA:   3'- gCaGGCCUCGaUG-UAGCUCGU----------CUUGC- -5'
23560 3' -53.3 NC_005261.1 + 60077 0.75 0.593755
Target:  5'- gGUCCGcGGGCUGCGU-GGGCAGcAGCa -3'
miRNA:   3'- gCAGGC-CUCGAUGUAgCUCGUC-UUGc -5'
23560 3' -53.3 NC_005261.1 + 61495 0.7 0.830812
Target:  5'- aCGUCCGcGAGC-ACGUCGgccagcugcgGGCAGuuGACGa -3'
miRNA:   3'- -GCAGGC-CUCGaUGUAGC----------UCGUC--UUGC- -5'
23560 3' -53.3 NC_005261.1 + 68113 0.67 0.948033
Target:  5'- uCGggCUGGAGCUGCG-CGGGCcgcGGcGCGg -3'
miRNA:   3'- -GCa-GGCCUCGAUGUaGCUCG---UCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 75065 0.68 0.917529
Target:  5'- uGUCgCGGAGC-ACGUCGGacaCGGAGCu -3'
miRNA:   3'- gCAG-GCCUCGaUGUAGCUc--GUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 75300 0.67 0.952263
Target:  5'- gGUgCGGGGCUGCcugccggUGGGCuAGGGCGc -3'
miRNA:   3'- gCAgGCCUCGAUGua-----GCUCG-UCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 76166 0.67 0.938849
Target:  5'- aCG-CCGuGGcGCUGCAguaCGAGCGGGGCc -3'
miRNA:   3'- -GCaGGC-CU-CGAUGUa--GCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 81333 0.68 0.911582
Target:  5'- cCGUCguCGGGGC--CGUCG-GCGGGGCGg -3'
miRNA:   3'- -GCAG--GCCUCGauGUAGCuCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 85264 0.67 0.938849
Target:  5'- gCGUCCagaaccacugGGGGUUagGCGUCGGGCucccGGGCGg -3'
miRNA:   3'- -GCAGG----------CCUCGA--UGUAGCUCGu---CUUGC- -5'
23560 3' -53.3 NC_005261.1 + 86645 0.66 0.969938
Target:  5'- gCGUCaggaGGAGCacgGCggCGAGgCAGAagACGg -3'
miRNA:   3'- -GCAGg---CCUCGa--UGuaGCUC-GUCU--UGC- -5'
23560 3' -53.3 NC_005261.1 + 91212 0.73 0.687178
Target:  5'- cCGUCgCGGGGCUggaccgccGCAUCGcGGCGGcGCGg -3'
miRNA:   3'- -GCAG-GCCUCGA--------UGUAGC-UCGUCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 92467 0.7 0.847443
Target:  5'- uCGUCCGGAugaGCggcACcgCGAGCucgcGGACGg -3'
miRNA:   3'- -GCAGGCCU---CGa--UGuaGCUCGu---CUUGC- -5'
23560 3' -53.3 NC_005261.1 + 92614 0.68 0.928684
Target:  5'- gCGUgCCGGGGCcccggGCGcgaGAGCGGGACc -3'
miRNA:   3'- -GCA-GGCCUCGa----UGUag-CUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 93670 0.68 0.92323
Target:  5'- gGUCCGcGGGCgGCggCGccGGCGGGGCGc -3'
miRNA:   3'- gCAGGC-CUCGaUGuaGC--UCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 95630 0.68 0.928684
Target:  5'- gGUCCaGGAGCgGCugggCGAGCGcGACGc -3'
miRNA:   3'- gCAGG-CCUCGaUGua--GCUCGUcUUGC- -5'
23560 3' -53.3 NC_005261.1 + 97241 0.66 0.963543
Target:  5'- gGcCCGGccGGCUGgGUCGcggggucggguGGCGGGACGu -3'
miRNA:   3'- gCaGGCC--UCGAUgUAGC-----------UCGUCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.