miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 3' -53.3 NC_005261.1 + 102597 0.66 0.966849
Target:  5'- uGgggCUGGGGCUGgGgcUUGGGCAGaAACGg -3'
miRNA:   3'- gCa--GGCCUCGAUgU--AGCUCGUC-UUGC- -5'
23560 3' -53.3 NC_005261.1 + 100631 0.68 0.927074
Target:  5'- --aCCGGAGCUGCAgggaccggcCGugugguaccggggcGGCAGGACGc -3'
miRNA:   3'- gcaGGCCUCGAUGUa--------GC--------------UCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 100460 0.66 0.963543
Target:  5'- aGUCCguuGGGGCgccgGCGcUUGGGCGGcGCGg -3'
miRNA:   3'- gCAGG---CCUCGa---UGU-AGCUCGUCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 99050 0.68 0.92323
Target:  5'- uCG-CCGGGGCgcgaGUCGGGCccGAGCGc -3'
miRNA:   3'- -GCaGGCCUCGaug-UAGCUCGu-CUUGC- -5'
23560 3' -53.3 NC_005261.1 + 97673 0.66 0.972815
Target:  5'- gCGUCCgcGGGGCUugGgCGGGgcugcCGGGGCGg -3'
miRNA:   3'- -GCAGG--CCUCGAugUaGCUC-----GUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 97617 0.73 0.676867
Target:  5'- nGggCGGAGCggGCGgagCGGGCGGAGCGg -3'
miRNA:   3'- gCagGCCUCGa-UGUa--GCUCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 97589 0.75 0.583414
Target:  5'- gCGggCGGAGCggGCGgagCGGGCGGAGCGg -3'
miRNA:   3'- -GCagGCCUCGa-UGUa--GCUCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 97573 0.78 0.400369
Target:  5'- gCGUCgCGGAGCUGCuGUCGAcGCuGGACGu -3'
miRNA:   3'- -GCAG-GCCUCGAUG-UAGCU-CGuCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 97241 0.66 0.963543
Target:  5'- gGcCCGGccGGCUGgGUCGcggggucggguGGCGGGACGu -3'
miRNA:   3'- gCaGGCC--UCGAUgUAGC-----------UCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 95630 0.68 0.928684
Target:  5'- gGUCCaGGAGCgGCugggCGAGCGcGACGc -3'
miRNA:   3'- gCAGG-CCUCGaUGua--GCUCGUcUUGC- -5'
23560 3' -53.3 NC_005261.1 + 93670 0.68 0.92323
Target:  5'- gGUCCGcGGGCgGCggCGccGGCGGGGCGc -3'
miRNA:   3'- gCAGGC-CUCGaUGuaGC--UCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 92614 0.68 0.928684
Target:  5'- gCGUgCCGGGGCcccggGCGcgaGAGCGGGACc -3'
miRNA:   3'- -GCA-GGCCUCGa----UGUag-CUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 92467 0.7 0.847443
Target:  5'- uCGUCCGGAugaGCggcACcgCGAGCucgcGGACGg -3'
miRNA:   3'- -GCAGGCCU---CGa--UGuaGCUCGu---CUUGC- -5'
23560 3' -53.3 NC_005261.1 + 91212 0.73 0.687178
Target:  5'- cCGUCgCGGGGCUggaccgccGCAUCGcGGCGGcGCGg -3'
miRNA:   3'- -GCAG-GCCUCGA--------UGUAGC-UCGUCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 86645 0.66 0.969938
Target:  5'- gCGUCaggaGGAGCacgGCggCGAGgCAGAagACGg -3'
miRNA:   3'- -GCAGg---CCUCGa--UGuaGCUC-GUCU--UGC- -5'
23560 3' -53.3 NC_005261.1 + 85264 0.67 0.938849
Target:  5'- gCGUCCagaaccacugGGGGUUagGCGUCGGGCucccGGGCGg -3'
miRNA:   3'- -GCAGG----------CCUCGA--UGUAGCUCGu---CUUGC- -5'
23560 3' -53.3 NC_005261.1 + 81333 0.68 0.911582
Target:  5'- cCGUCguCGGGGC--CGUCG-GCGGGGCGg -3'
miRNA:   3'- -GCAG--GCCUCGauGUAGCuCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 76166 0.67 0.938849
Target:  5'- aCG-CCGuGGcGCUGCAguaCGAGCGGGGCc -3'
miRNA:   3'- -GCaGGC-CU-CGAUGUa--GCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 75300 0.67 0.952263
Target:  5'- gGUgCGGGGCUGCcugccggUGGGCuAGGGCGc -3'
miRNA:   3'- gCAgGCCUCGAUGua-----GCUCG-UCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 75065 0.68 0.917529
Target:  5'- uGUCgCGGAGC-ACGUCGGacaCGGAGCu -3'
miRNA:   3'- gCAG-GCCUCGaUGUAGCUc--GUCUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.