miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 3' -53.3 NC_005261.1 + 97573 0.78 0.400369
Target:  5'- gCGUCgCGGAGCUGCuGUCGAcGCuGGACGu -3'
miRNA:   3'- -GCAG-GCCUCGAUG-UAGCU-CGuCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 97589 0.75 0.583414
Target:  5'- gCGggCGGAGCggGCGgagCGGGCGGAGCGg -3'
miRNA:   3'- -GCagGCCUCGa-UGUa--GCUCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 97617 0.73 0.676867
Target:  5'- nGggCGGAGCggGCGgagCGGGCGGAGCGg -3'
miRNA:   3'- gCagGCCUCGa-UGUa--GCUCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 97673 0.66 0.972815
Target:  5'- gCGUCCgcGGGGCUugGgCGGGgcugcCGGGGCGg -3'
miRNA:   3'- -GCAGG--CCUCGAugUaGCUC-----GUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 99050 0.68 0.92323
Target:  5'- uCG-CCGGGGCgcgaGUCGGGCccGAGCGc -3'
miRNA:   3'- -GCaGGCCUCGaug-UAGCUCGu-CUUGC- -5'
23560 3' -53.3 NC_005261.1 + 100460 0.66 0.963543
Target:  5'- aGUCCguuGGGGCgccgGCGcUUGGGCGGcGCGg -3'
miRNA:   3'- gCAGG---CCUCGa---UGU-AGCUCGUCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 100631 0.68 0.927074
Target:  5'- --aCCGGAGCUGCAgggaccggcCGugugguaccggggcGGCAGGACGc -3'
miRNA:   3'- gcaGGCCUCGAUGUa--------GC--------------UCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 102597 0.66 0.966849
Target:  5'- uGgggCUGGGGCUGgGgcUUGGGCAGaAACGg -3'
miRNA:   3'- gCa--GGCCUCGAUgU--AGCUCGUC-UUGC- -5'
23560 3' -53.3 NC_005261.1 + 104167 0.79 0.395183
Target:  5'- cCGUCCGcGGGCgccgcgcgcggguCGUCGGGCGGGACGg -3'
miRNA:   3'- -GCAGGC-CUCGau-----------GUAGCUCGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 107554 0.71 0.795374
Target:  5'- aCGUCCGaGAGCacgGCAgcggCGAaGUAGGGCGc -3'
miRNA:   3'- -GCAGGC-CUCGa--UGUa---GCU-CGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 108174 0.72 0.757499
Target:  5'- gCGUCUGGAGCgcagGCcgCGgccGGCAGGccGCGg -3'
miRNA:   3'- -GCAGGCCUCGa---UGuaGC---UCGUCU--UGC- -5'
23560 3' -53.3 NC_005261.1 + 109675 0.75 0.552635
Target:  5'- gGcCCGGcgGGCcGCGUCGAGCAGGGCc -3'
miRNA:   3'- gCaGGCC--UCGaUGUAGCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 115625 0.67 0.943563
Target:  5'- aCGUCgCGGcAGCgcaGCGUCGGGgGGAAg- -3'
miRNA:   3'- -GCAG-GCC-UCGa--UGUAGCUCgUCUUgc -5'
23560 3' -53.3 NC_005261.1 + 116371 0.67 0.952263
Target:  5'- gCGUUCGcGAGCgcgaGCGUCagcuGCGGGGCGa -3'
miRNA:   3'- -GCAGGC-CUCGa---UGUAGcu--CGUCUUGC- -5'
23560 3' -53.3 NC_005261.1 + 122974 0.68 0.928684
Target:  5'- cCG-CCGGGGCgaucGCGgcccacugCGAGCGGGGCc -3'
miRNA:   3'- -GCaGGCCUCGa---UGUa-------GCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 125034 0.66 0.972815
Target:  5'- -cUCCGGuggGGCgcugAC-UCGGGCAGGGCc -3'
miRNA:   3'- gcAGGCC---UCGa---UGuAGCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 125111 0.66 0.969938
Target:  5'- -uUCCGGGGC-GCGcUCGGGUGGuGCGu -3'
miRNA:   3'- gcAGGCCUCGaUGU-AGCUCGUCuUGC- -5'
23560 3' -53.3 NC_005261.1 + 125404 0.71 0.813434
Target:  5'- aCGuUCCGGAGCgGCG-CGGGCGGcGCu -3'
miRNA:   3'- -GC-AGGCCUCGaUGUaGCUCGUCuUGc -5'
23560 3' -53.3 NC_005261.1 + 125809 0.74 0.645743
Target:  5'- uGggCCGGGGCcGCcgCGAGCGGGGCc -3'
miRNA:   3'- gCa-GGCCUCGaUGuaGCUCGUCUUGc -5'
23560 3' -53.3 NC_005261.1 + 127808 0.66 0.968728
Target:  5'- gCGUCCGuGGGC-ACAgcacccguauggcCGAGCAGAAa- -3'
miRNA:   3'- -GCAGGC-CUCGaUGUa------------GCUCGUCUUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.