Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23560 | 3' | -53.3 | NC_005261.1 | + | 30413 | 0.68 | 0.92323 |
Target: 5'- gCGggCCGGGGC-ACcgCGGGCGGAccuggaggaggACGg -3' miRNA: 3'- -GCa-GGCCUCGaUGuaGCUCGUCU-----------UGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 92614 | 0.68 | 0.928684 |
Target: 5'- gCGUgCCGGGGCcccggGCGcgaGAGCGGGACc -3' miRNA: 3'- -GCA-GGCCUCGa----UGUag-CUCGUCUUGc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 85264 | 0.67 | 0.938849 |
Target: 5'- gCGUCCagaaccacugGGGGUUagGCGUCGGGCucccGGGCGg -3' miRNA: 3'- -GCAGG----------CCUCGA--UGUAGCUCGu---CUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 37941 | 0.78 | 0.426939 |
Target: 5'- gCG-CCGGAGCcGCGUCGAGCGGGu-- -3' miRNA: 3'- -GCaGGCCUCGaUGUAGCUCGUCUugc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 107554 | 0.71 | 0.795374 |
Target: 5'- aCGUCCGaGAGCacgGCAgcggCGAaGUAGGGCGc -3' miRNA: 3'- -GCAGGC-CUCGa--UGUa---GCU-CGUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 93670 | 0.68 | 0.92323 |
Target: 5'- gGUCCGcGGGCgGCggCGccGGCGGGGCGc -3' miRNA: 3'- gCAGGC-CUCGaUGuaGC--UCGUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 50420 | 0.67 | 0.938849 |
Target: 5'- gCGUCgCGGAGCcGC-UCGuGCAGcguGCGc -3' miRNA: 3'- -GCAG-GCCUCGaUGuAGCuCGUCu--UGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 125404 | 0.71 | 0.813434 |
Target: 5'- aCGuUCCGGAGCgGCG-CGGGCGGcGCu -3' miRNA: 3'- -GC-AGGCCUCGaUGUaGCUCGUCuUGc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 136596 | 0.67 | 0.938849 |
Target: 5'- aCGcCCGGcGCaGCGUgGAGCGGcGCGc -3' miRNA: 3'- -GCaGGCCuCGaUGUAgCUCGUCuUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 129705 | 0.68 | 0.916946 |
Target: 5'- cCGgggCCGGAggcaggcccgccgGCUGCAgCG-GCAGGGCGg -3' miRNA: 3'- -GCa--GGCCU-------------CGAUGUaGCuCGUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 53451 | 0.69 | 0.863266 |
Target: 5'- gCGUCgGGAGgU-CGcCGGGCGGGACGc -3' miRNA: 3'- -GCAGgCCUCgAuGUaGCUCGUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 115625 | 0.67 | 0.943563 |
Target: 5'- aCGUCgCGGcAGCgcaGCGUCGGGgGGAAg- -3' miRNA: 3'- -GCAG-GCC-UCGa--UGUAGCUCgUCUUgc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 95630 | 0.68 | 0.928684 |
Target: 5'- gGUCCaGGAGCgGCugggCGAGCGcGACGc -3' miRNA: 3'- gCAGG-CCUCGaUGua--GCUCGUcUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 3657 | 0.72 | 0.757499 |
Target: 5'- gCGUCUGGAGCgcagGCcgCGgccGGCAGGccGCGg -3' miRNA: 3'- -GCAGGCCUCGa---UGuaGC---UCGUCU--UGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 60077 | 0.75 | 0.593755 |
Target: 5'- gGUCCGcGGGCUGCGU-GGGCAGcAGCa -3' miRNA: 3'- gCAGGC-CUCGAUGUAgCUCGUC-UUGc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 104167 | 0.79 | 0.395183 |
Target: 5'- cCGUCCGcGGGCgccgcgcgcggguCGUCGGGCGGGACGg -3' miRNA: 3'- -GCAGGC-CUCGau-----------GUAGCUCGUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 39992 | 0.68 | 0.928684 |
Target: 5'- cCG-CCGGcguGCgugaagGCGUaCGAGCAGAACu -3' miRNA: 3'- -GCaGGCCu--CGa-----UGUA-GCUCGUCUUGc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 76166 | 0.67 | 0.938849 |
Target: 5'- aCG-CCGuGGcGCUGCAguaCGAGCGGGGCc -3' miRNA: 3'- -GCaGGC-CU-CGAUGUa--GCUCGUCUUGc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 122974 | 0.68 | 0.928684 |
Target: 5'- cCG-CCGGGGCgaucGCGgcccacugCGAGCGGGGCc -3' miRNA: 3'- -GCaGGCCUCGa---UGUa-------GCUCGUCUUGc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 127808 | 0.66 | 0.968728 |
Target: 5'- gCGUCCGuGGGC-ACAgcacccguauggcCGAGCAGAAa- -3' miRNA: 3'- -GCAGGC-CUCGaUGUa------------GCUCGUCUUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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