Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23560 | 3' | -53.3 | NC_005261.1 | + | 125034 | 0.66 | 0.972815 |
Target: 5'- -cUCCGGuggGGCgcugAC-UCGGGCAGGGCc -3' miRNA: 3'- gcAGGCC---UCGa---UGuAGCUCGUCUUGc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 92614 | 0.68 | 0.928684 |
Target: 5'- gCGUgCCGGGGCcccggGCGcgaGAGCGGGACc -3' miRNA: 3'- -GCA-GGCCUCGa----UGUag-CUCGUCUUGc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 30413 | 0.68 | 0.92323 |
Target: 5'- gCGggCCGGGGC-ACcgCGGGCGGAccuggaggaggACGg -3' miRNA: 3'- -GCa-GGCCUCGaUGuaGCUCGUCU-----------UGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 131530 | 1.09 | 0.004782 |
Target: 5'- aCGUCCGGAGCUACAUCGAGCAGAACGu -3' miRNA: 3'- -GCAGGCCUCGAUGUAGCUCGUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 97241 | 0.66 | 0.963543 |
Target: 5'- gGcCCGGccGGCUGgGUCGcggggucggguGGCGGGACGu -3' miRNA: 3'- gCaGGCC--UCGAUgUAGC-----------UCGUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 47882 | 0.66 | 0.963543 |
Target: 5'- gCGUCCGGGGagcgGCggCG-GCGGcGCGa -3' miRNA: 3'- -GCAGGCCUCga--UGuaGCuCGUCuUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 27710 | 0.67 | 0.952263 |
Target: 5'- uCG-CCGGAGCccucGCcgCGGGaGGAGCGg -3' miRNA: 3'- -GCaGGCCUCGa---UGuaGCUCgUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 23981 | 0.67 | 0.952263 |
Target: 5'- -uUCCGGgcgGGCUA-GUCGcGGCGGAGCGc -3' miRNA: 3'- gcAGGCC---UCGAUgUAGC-UCGUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 115625 | 0.67 | 0.943563 |
Target: 5'- aCGUCgCGGcAGCgcaGCGUCGGGgGGAAg- -3' miRNA: 3'- -GCAG-GCC-UCGa--UGUAGCUCgUCUUgc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 39992 | 0.68 | 0.928684 |
Target: 5'- cCG-CCGGcguGCgugaagGCGUaCGAGCAGAACu -3' miRNA: 3'- -GCaGGCCu--CGa-----UGUA-GCUCGUCUUGc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 50420 | 0.67 | 0.938849 |
Target: 5'- gCGUCgCGGAGCcGC-UCGuGCAGcguGCGc -3' miRNA: 3'- -GCAG-GCCUCGaUGuAGCuCGUCu--UGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 68113 | 0.67 | 0.948033 |
Target: 5'- uCGggCUGGAGCUGCG-CGGGCcgcGGcGCGg -3' miRNA: 3'- -GCa-GGCCUCGAUGUaGCUCG---UCuUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 97673 | 0.66 | 0.972815 |
Target: 5'- gCGUCCgcGGGGCUugGgCGGGgcugcCGGGGCGg -3' miRNA: 3'- -GCAGG--CCUCGAugUaGCUC-----GUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 85264 | 0.67 | 0.938849 |
Target: 5'- gCGUCCagaaccacugGGGGUUagGCGUCGGGCucccGGGCGg -3' miRNA: 3'- -GCAGG----------CCUCGA--UGUAGCUCGu---CUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 125111 | 0.66 | 0.969938 |
Target: 5'- -uUCCGGGGC-GCGcUCGGGUGGuGCGu -3' miRNA: 3'- gcAGGCCUCGaUGU-AGCUCGUCuUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 11854 | 0.67 | 0.952263 |
Target: 5'- gCGUUCGcGAGCgcgaGCGUCagcuGCGGGGCGa -3' miRNA: 3'- -GCAGGC-CUCGa---UGUAGcu--CGUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 76166 | 0.67 | 0.938849 |
Target: 5'- aCG-CCGuGGcGCUGCAguaCGAGCGGGGCc -3' miRNA: 3'- -GCaGGC-CU-CGAUGUa--GCUCGUCUUGc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 95630 | 0.68 | 0.928684 |
Target: 5'- gGUCCaGGAGCgGCugggCGAGCGcGACGc -3' miRNA: 3'- gCAGG-CCUCGaUGua--GCUCGUcUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 23291 | 0.66 | 0.968728 |
Target: 5'- gCGUCCGuGGGC-ACAgcacccguauggcCGAGCAGAAa- -3' miRNA: 3'- -GCAGGC-CUCGaUGUa------------GCUCGUCUUgc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 24382 | 0.67 | 0.952263 |
Target: 5'- --cCCGGugGGCU-CGUCGgcGGCGGGGCGg -3' miRNA: 3'- gcaGGCC--UCGAuGUAGC--UCGUCUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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