miRNA display CGI


Results 81 - 100 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 85378 0.66 0.412968
Target:  5'- cGCCGcCGCCCucgGGCUucugguaGgCgCCCGCGAg -3'
miRNA:   3'- -CGGCaGCGGG---CCGA-------CgGgGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 95307 0.66 0.412968
Target:  5'- uCCGcacccacUCGCCCGGCgGCCCCggaGCGcCc -3'
miRNA:   3'- cGGC-------AGCGGGCCGaCGGGGgg-CGCuG- -5'
23560 5' -66.9 NC_005261.1 + 43460 0.66 0.408922
Target:  5'- -aCGUCGCCgGGCgggUGCuggcggagugcgaggCCUUCGCGGCg -3'
miRNA:   3'- cgGCAGCGGgCCG---ACG---------------GGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 100107 0.66 0.408922
Target:  5'- uGCCGcCGCCCagcggcgcccgcaccGGCcGCagCCCCCGCucGGCc -3'
miRNA:   3'- -CGGCaGCGGG---------------CCGaCG--GGGGGCG--CUG- -5'
23560 5' -66.9 NC_005261.1 + 65670 0.66 0.406507
Target:  5'- cUCGgCGCCCGGCguuuuuuccucgcccGUCCCCUGCcGCg -3'
miRNA:   3'- cGGCaGCGGGCCGa--------------CGGGGGGCGcUG- -5'
23560 5' -66.9 NC_005261.1 + 5863 0.66 0.405703
Target:  5'- cGCCGcgaGCgCGGCgaGCgCgCCGCGGCg -3'
miRNA:   3'- -CGGCag-CGgGCCGa-CGgGgGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 136931 0.66 0.405703
Target:  5'- uGCCGcCGCCggcgaCGGgaGCCCCgCCGgccugggcgcCGGCa -3'
miRNA:   3'- -CGGCaGCGG-----GCCgaCGGGG-GGC----------GCUG- -5'
23560 5' -66.9 NC_005261.1 + 79144 0.66 0.405703
Target:  5'- gGCCaccaGCCCGGCgagcaccaGCagCCCCGUGGCc -3'
miRNA:   3'- -CGGcag-CGGGCCGa-------CGg-GGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 44682 0.66 0.405703
Target:  5'- cGCCGUCGaCCgcuacugggCGGCgcgcgcggGCUUCCuCGCGGCc -3'
miRNA:   3'- -CGGCAGC-GG---------GCCGa-------CGGGGG-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 32414 0.66 0.405703
Target:  5'- uGCCGcCGCCggcgaCGGgaGCCCCgCCGgccugggcgcCGGCa -3'
miRNA:   3'- -CGGCaGCGG-----GCCgaCGGGG-GGC----------GCUG- -5'
23560 5' -66.9 NC_005261.1 + 64168 0.66 0.405703
Target:  5'- gGCCGcgUCGCgCaGCUGCCgcagCCCCcCGGCg -3'
miRNA:   3'- -CGGC--AGCGgGcCGACGG----GGGGcGCUG- -5'
23560 5' -66.9 NC_005261.1 + 92577 0.66 0.405703
Target:  5'- cGCCGcgCGCCCacgcgcgaGcGCaGCCgCUCGCGGCg -3'
miRNA:   3'- -CGGCa-GCGGG--------C-CGaCGGgGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 49788 0.66 0.405703
Target:  5'- -aCGUCGCgCCaGCgcgagacgucGCCCUCCGCGGg -3'
miRNA:   3'- cgGCAGCG-GGcCGa---------CGGGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 109516 0.66 0.405703
Target:  5'- cGCCGagGCCCccggGCCCCCCGgGu- -3'
miRNA:   3'- -CGGCagCGGGccgaCGGGGGGCgCug -5'
23560 5' -66.9 NC_005261.1 + 69135 0.66 0.405703
Target:  5'- cCCGUaGCagCUGGCcaUGCCCCagCGCGACa -3'
miRNA:   3'- cGGCAgCG--GGCCG--ACGGGGg-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 84562 0.66 0.405703
Target:  5'- cGCUGUCGaggccgcgacCCgCGGCcagGCCgCCUGCGAUc -3'
miRNA:   3'- -CGGCAGC----------GG-GCCGa--CGGgGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 106701 0.66 0.405703
Target:  5'- aGUCGgCGCucagcagcagCCGGUUGCCCagcgCCGCGAg -3'
miRNA:   3'- -CGGCaGCG----------GGCCGACGGGg---GGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 101846 0.66 0.405703
Target:  5'- cGCCGcgCGCCCGcCgGCCgCCUGCaGCa -3'
miRNA:   3'- -CGGCa-GCGGGCcGaCGGgGGGCGcUG- -5'
23560 5' -66.9 NC_005261.1 + 4998 0.66 0.405703
Target:  5'- cGCCGagGCCCccggGCCCCCCGgGu- -3'
miRNA:   3'- -CGGCagCGGGccgaCGGGGGGCgCug -5'
23560 5' -66.9 NC_005261.1 + 2183 0.66 0.405703
Target:  5'- aGUCGgCGCucagcagcagCCGGUUGCCCagcgCCGCGAg -3'
miRNA:   3'- -CGGCaGCG----------GGCCGACGGGg---GGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.