miRNA display CGI


Results 61 - 80 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 16957 0.66 0.421956
Target:  5'- -gCGagGCCgGGCgGCCgCCCCgucuGCGGCg -3'
miRNA:   3'- cgGCagCGGgCCGaCGG-GGGG----CGCUG- -5'
23560 5' -66.9 NC_005261.1 + 36014 0.66 0.421135
Target:  5'- cGCCG-CGgCCaaGGCUcuuccccGCCccuaCCCCGCGACc -3'
miRNA:   3'- -CGGCaGCgGG--CCGA-------CGG----GGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 20039 0.66 0.418675
Target:  5'- gGCCGguucCGUCCGGCggugugaccuccaGCCCCUuguCGCuGACg -3'
miRNA:   3'- -CGGCa---GCGGGCCGa------------CGGGGG---GCG-CUG- -5'
23560 5' -66.9 NC_005261.1 + 9867 0.66 0.417039
Target:  5'- aGCCGgccUGcCCCGGCgaGCCCacccuagccggcccgCCCGgGGCa -3'
miRNA:   3'- -CGGCa--GC-GGGCCGa-CGGG---------------GGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 114441 0.66 0.417039
Target:  5'- aGCCGgccUGcCCCGGCgaGCCCacccuagccggcccgCCCGgGGCa -3'
miRNA:   3'- -CGGCa--GC-GGGCCGa-CGGG---------------GGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 114384 0.66 0.417039
Target:  5'- aGCCGgccUGcCCCGGCgaGCCCacccuagccggcccgCCCGgGGCa -3'
miRNA:   3'- -CGGCa--GC-GGGCCGa-CGGG---------------GGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 102423 0.66 0.413781
Target:  5'- uGCCGcUGCgCGGCcGCCUCCU-CGGCg -3'
miRNA:   3'- -CGGCaGCGgGCCGaCGGGGGGcGCUG- -5'
23560 5' -66.9 NC_005261.1 + 105860 0.66 0.413781
Target:  5'- cGCCG-CGCCUGcaccaGC-GUCUCCCGCGGg -3'
miRNA:   3'- -CGGCaGCGGGC-----CGaCGGGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 1343 0.66 0.413781
Target:  5'- cGCCG-CGCCUGcaccaGC-GUCUCCCGCGGg -3'
miRNA:   3'- -CGGCaGCGGGC-----CGaCGGGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 135695 0.66 0.413781
Target:  5'- cGCCGcggCGCUggCGGCcuacUGCCgCCCCgagucGCGGCg -3'
miRNA:   3'- -CGGCa--GCGG--GCCG----ACGG-GGGG-----CGCUG- -5'
23560 5' -66.9 NC_005261.1 + 28442 0.66 0.413781
Target:  5'- gGCCGUCGCagcagCGGCcgggacGCCCgagaaCgGCGACg -3'
miRNA:   3'- -CGGCAGCGg----GCCGa-----CGGGg----GgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 91462 0.66 0.413781
Target:  5'- gGCCc-CGCCC-GC-GCCUCCCaGCGGCg -3'
miRNA:   3'- -CGGcaGCGGGcCGaCGGGGGG-CGCUG- -5'
23560 5' -66.9 NC_005261.1 + 48382 0.66 0.413781
Target:  5'- cGCCGaugaCGCCgCGGCccuccgGCCCggCCGCGAa -3'
miRNA:   3'- -CGGCa---GCGG-GCCGa-----CGGGg-GGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 85867 0.66 0.413781
Target:  5'- gGCCGcCGCCgCgGGCUccGgCUCCgGCGGCa -3'
miRNA:   3'- -CGGCaGCGG-G-CCGA--CgGGGGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 8050 0.66 0.413781
Target:  5'- gGCCGUCagcuCCCuGCUGCCggCgCCGCuGACg -3'
miRNA:   3'- -CGGCAGc---GGGcCGACGG--GgGGCG-CUG- -5'
23560 5' -66.9 NC_005261.1 + 63800 0.66 0.413781
Target:  5'- cGCCGggggggCGCUcuccuCGGCccuCCCgCCCGCGGCc -3'
miRNA:   3'- -CGGCa-----GCGG-----GCCGac-GGG-GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 101511 0.66 0.413781
Target:  5'- gGCCa--GCCCGGC-GCCCUcgUCGCGGu -3'
miRNA:   3'- -CGGcagCGGGCCGaCGGGG--GGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 37293 0.66 0.413781
Target:  5'- cCUGUUGCUcgCGGaucGCCCCCCGCacgagGACg -3'
miRNA:   3'- cGGCAGCGG--GCCga-CGGGGGGCG-----CUG- -5'
23560 5' -66.9 NC_005261.1 + 103388 0.66 0.413781
Target:  5'- cGCCG-CGCCgCGGCcGCCugcgccuccagCUCCGCG-Cg -3'
miRNA:   3'- -CGGCaGCGG-GCCGaCGG-----------GGGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 81809 0.66 0.413781
Target:  5'- aGCCGcUGCgCGGCggugacGCCCCgCGCcGCg -3'
miRNA:   3'- -CGGCaGCGgGCCGa-----CGGGGgGCGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.