Results 61 - 80 of 617 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 62766 | 0.75 | 0.106412 |
Target: 5'- cGCCGcCGCCCGGC-GCCuggaacuggCCCCGUGGg -3' miRNA: 3'- -CGGCaGCGGGCCGaCGG---------GGGGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 124559 | 0.75 | 0.106412 |
Target: 5'- cCCGcgCGCCCcGCgccCCCCCCGCGGCg -3' miRNA: 3'- cGGCa-GCGGGcCGac-GGGGGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 68786 | 0.74 | 0.126222 |
Target: 5'- cGCCGcagcUCGUCCGcGCUGCCCgucUCCGUGAUg -3' miRNA: 3'- -CGGC----AGCGGGC-CGACGGG---GGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 40026 | 0.74 | 0.132482 |
Target: 5'- uGCCGUggcggCGCCC-GCUGCCCgCCGCGcCc -3' miRNA: 3'- -CGGCA-----GCGGGcCGACGGGgGGCGCuG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 35922 | 0.74 | 0.132482 |
Target: 5'- cGCCG-CGCCgCGGCgcgcgGCUacgaCCCGCGGCc -3' miRNA: 3'- -CGGCaGCGG-GCCGa----CGGg---GGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 94202 | 0.73 | 0.135718 |
Target: 5'- gGCCGcCGCgCGGCgGCCgCCCGCcGCg -3' miRNA: 3'- -CGGCaGCGgGCCGaCGGgGGGCGcUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 11281 | 0.73 | 0.135718 |
Target: 5'- uGCCGcccccgCGCCCGGC-GCCCCUgGCcGCg -3' miRNA: 3'- -CGGCa-----GCGGGCCGaCGGGGGgCGcUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 41049 | 0.73 | 0.139027 |
Target: 5'- gGCCG-CgGCCCGGCcGgCgCCCGCGACc -3' miRNA: 3'- -CGGCaG-CGGGCCGaCgGgGGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 3287 | 0.73 | 0.14241 |
Target: 5'- cGCCcUCGCCCaucGGCUcGUCCUCCGCGGu -3' miRNA: 3'- -CGGcAGCGGG---CCGA-CGGGGGGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 109408 | 0.73 | 0.149045 |
Target: 5'- aGCCGcggcCGCCucggcuucggcggCGGCUGCCuCCgCCGCGGCc -3' miRNA: 3'- -CGGCa---GCGG-------------GCCGACGG-GG-GGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 133841 | 0.74 | 0.120237 |
Target: 5'- cGCCGcCGCCCGGCcgcgUGCgCUUCgGCGGCg -3' miRNA: 3'- -CGGCaGCGGGCCG----ACG-GGGGgCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 34352 | 0.74 | 0.117345 |
Target: 5'- gGCgCGcCGCCCGGCggcGCCgCCCCGCcGCc -3' miRNA: 3'- -CG-GCaGCGGGCCGa--CGG-GGGGCGcUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 137150 | 0.75 | 0.106412 |
Target: 5'- aGCCGggcUCGCCCuggagcggGGCcaGCCCCCCGCGcCg -3' miRNA: 3'- -CGGC---AGCGGG--------CCGa-CGGGGGGCGCuG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 42458 | 0.75 | 0.110936 |
Target: 5'- cGCCGgCGCagcgcgcgaggcucCCGGC-GCCCCCgGCGGCg -3' miRNA: 3'- -CGGCaGCG--------------GGCCGaCGGGGGgCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 23 | 0.75 | 0.111753 |
Target: 5'- aGCCGcCGUCCGccCUGCCCCCCGCc-- -3' miRNA: 3'- -CGGCaGCGGGCc-GACGGGGGGCGcug -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 6133 | 0.75 | 0.111753 |
Target: 5'- aGCgCGUCGC--GGCcGCCCUCCGCGGCa -3' miRNA: 3'- -CG-GCAGCGggCCGaCGGGGGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 137695 | 0.75 | 0.111753 |
Target: 5'- aGCCGcCGUCCGccCUGCCCCCCGCc-- -3' miRNA: 3'- -CGGCaGCGGGCc-GACGGGGGGCGcug -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 94427 | 0.75 | 0.111753 |
Target: 5'- gGgCG-CGCCCGGC-GCCCccucaCCCGCGGCg -3' miRNA: 3'- -CgGCaGCGGGCCGaCGGG-----GGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 47354 | 0.75 | 0.114517 |
Target: 5'- uGCCGUCGCCCagcgcgcagacGGCgucguaggGCaUCCCCGCGAa -3' miRNA: 3'- -CGGCAGCGGG-----------CCGa-------CG-GGGGGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 68464 | 0.75 | 0.114517 |
Target: 5'- gGCUcaGUC-CCCGGCgccGCCCCCCGCG-Cu -3' miRNA: 3'- -CGG--CAGcGGGCCGa--CGGGGGGCGCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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