miRNA display CGI


Results 61 - 80 of 617 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 85867 0.66 0.413781
Target:  5'- gGCCGcCGCCgCgGGCUccGgCUCCgGCGGCa -3'
miRNA:   3'- -CGGCaGCGG-G-CCGA--CgGGGGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 109089 0.66 0.438595
Target:  5'- cGCgGgcggGUCCGGCggggcGCCCCCCgGCGcCa -3'
miRNA:   3'- -CGgCag--CGGGCCGa----CGGGGGG-CGCuG- -5'
23560 5' -66.9 NC_005261.1 + 82238 0.66 0.438595
Target:  5'- cGCCccCGCCgCGGUUGCCgaUgGCGACg -3'
miRNA:   3'- -CGGcaGCGG-GCCGACGGggGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 88043 0.66 0.438595
Target:  5'- cGCUGcUGCaCCGGCUGCUgcggcggugCCCGCGGa -3'
miRNA:   3'- -CGGCaGCG-GGCCGACGGg--------GGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 61058 0.66 0.438595
Target:  5'- -aCGUgUGCCCuGCgaUGCCCgCCuCGCGGCg -3'
miRNA:   3'- cgGCA-GCGGGcCG--ACGGG-GG-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 72967 0.66 0.438595
Target:  5'- aCCG--GCaCCGGCUGaaCCCgGCGACg -3'
miRNA:   3'- cGGCagCG-GGCCGACggGGGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 137985 0.66 0.397726
Target:  5'- aGCCGcCGCCgCaGCcggGCCCgCUCGCGGg -3'
miRNA:   3'- -CGGCaGCGG-GcCGa--CGGG-GGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 2549 0.66 0.438595
Target:  5'- aGCCGcCGCgCGGCgcagaGCUCCUCgaGCGAg -3'
miRNA:   3'- -CGGCaGCGgGCCGa----CGGGGGG--CGCUg -5'
23560 5' -66.9 NC_005261.1 + 17313 0.66 0.438595
Target:  5'- gGCCGgggucgCgGCCCGGCccgGCCcagcucccgCCCCGCccgGGCa -3'
miRNA:   3'- -CGGCa-----G-CGGGCCGa--CGG---------GGGGCG---CUG- -5'
23560 5' -66.9 NC_005261.1 + 85957 0.66 0.397726
Target:  5'- cGCCGUCGugaccaccgcccCCCGGCgcggacagcGCCCuCCCaCGAa -3'
miRNA:   3'- -CGGCAGC------------GGGCCGa--------CGGG-GGGcGCUg -5'
23560 5' -66.9 NC_005261.1 + 16957 0.66 0.421956
Target:  5'- -gCGagGCCgGGCgGCCgCCCCgucuGCGGCg -3'
miRNA:   3'- cgGCagCGGgCCGaCGG-GGGG----CGCUG- -5'
23560 5' -66.9 NC_005261.1 + 80733 0.66 0.430228
Target:  5'- cCCGcCGCCgGGacgUGCCCgUCGCGGg -3'
miRNA:   3'- cGGCaGCGGgCCg--ACGGGgGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 133795 0.66 0.438595
Target:  5'- cGCauccCGCCCgGGCUGCUCgaCgGCGACg -3'
miRNA:   3'- -CGgca-GCGGG-CCGACGGGg-GgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 66264 0.66 0.38985
Target:  5'- uGCCGcgCGCUCcGC-GCCCCgCGcCGACg -3'
miRNA:   3'- -CGGCa-GCGGGcCGaCGGGGgGC-GCUG- -5'
23560 5' -66.9 NC_005261.1 + 11199 0.66 0.437754
Target:  5'- cGuuGUUGUuuuuaaauaaacgCCGcGUgGCCCCCCGCGGg -3'
miRNA:   3'- -CggCAGCG-------------GGC-CGaCGGGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 31036 0.66 0.438595
Target:  5'- cGCCGccuUCGCgCGGCUGCagggcuaCgCCGCcgaGACg -3'
miRNA:   3'- -CGGC---AGCGgGCCGACGg------GgGGCG---CUG- -5'
23560 5' -66.9 NC_005261.1 + 57261 0.66 0.437754
Target:  5'- cGCCGcacacgcuccgcaUCGCgCGGCaGCUgCUCGCGAg -3'
miRNA:   3'- -CGGC-------------AGCGgGCCGaCGGgGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 131823 0.66 0.438595
Target:  5'- cGCCGcCGCUugacgCGGC-GCCCgCCUGCuGCg -3'
miRNA:   3'- -CGGCaGCGG-----GCCGaCGGG-GGGCGcUG- -5'
23560 5' -66.9 NC_005261.1 + 48382 0.66 0.413781
Target:  5'- cGCCGaugaCGCCgCGGCccuccgGCCCggCCGCGAa -3'
miRNA:   3'- -CGGCa---GCGG-GCCGa-----CGGGg-GGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 61137 0.66 0.421956
Target:  5'- gGCCGUcgagagcagCGUCCGcGCcagcGCCUCgCGCGGCa -3'
miRNA:   3'- -CGGCA---------GCGGGC-CGa---CGGGGgGCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.