miRNA display CGI


Results 61 - 80 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 64168 0.66 0.405703
Target:  5'- gGCCGcgUCGCgCaGCUGCCgcagCCCCcCGGCg -3'
miRNA:   3'- -CGGC--AGCGgGcCGACGG----GGGGcGCUG- -5'
23560 5' -66.9 NC_005261.1 + 63934 0.66 0.396143
Target:  5'- -gCGUCugcuGCCCGGCggcgaccgccccGCCCgCCGCgGACg -3'
miRNA:   3'- cgGCAG----CGGGCCGa-----------CGGGgGGCG-CUG- -5'
23560 5' -66.9 NC_005261.1 + 58154 0.66 0.430228
Target:  5'- cGCCGguccgCGUCCcccacGCCCCCCGCGcCc -3'
miRNA:   3'- -CGGCa----GCGGGccga-CGGGGGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 89902 0.66 0.397726
Target:  5'- cGCCGcgcgCGCCCccgagcccgGGCccgacgcGCCCCCCGaGGCc -3'
miRNA:   3'- -CGGCa---GCGGG---------CCGa------CGGGGGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 4572 0.66 0.438595
Target:  5'- cGCgGgcggGUCCGGCggggcGCCCCCCgGCGcCa -3'
miRNA:   3'- -CGgCag--CGGGCCGa----CGGGGGG-CGCuG- -5'
23560 5' -66.9 NC_005261.1 + 2549 0.66 0.438595
Target:  5'- aGCCGcCGCgCGGCgcagaGCUCCUCgaGCGAg -3'
miRNA:   3'- -CGGCaGCGgGCCGa----CGGGGGG--CGCUg -5'
23560 5' -66.9 NC_005261.1 + 135552 0.66 0.392988
Target:  5'- aGCCGgcgCGCCgccggguccccagcgCGGCgggagccgccgcUGCCCgCCCGCGuGCu -3'
miRNA:   3'- -CGGCa--GCGG---------------GCCG------------ACGGG-GGGCGC-UG- -5'
23560 5' -66.9 NC_005261.1 + 83724 0.66 0.388287
Target:  5'- cGCCGUCGCCggagGGCgccugcguuugcGCCUgCCGCccGACg -3'
miRNA:   3'- -CGGCAGCGGg---CCGa-----------CGGGgGGCG--CUG- -5'
23560 5' -66.9 NC_005261.1 + 61058 0.66 0.438595
Target:  5'- -aCGUgUGCCCuGCgaUGCCCgCCuCGCGGCg -3'
miRNA:   3'- cgGCA-GCGGGcCG--ACGGG-GG-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 88043 0.66 0.438595
Target:  5'- cGCUGcUGCaCCGGCUGCUgcggcggugCCCGCGGa -3'
miRNA:   3'- -CGGCaGCG-GGCCGACGGg--------GGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 109089 0.66 0.438595
Target:  5'- cGCgGgcggGUCCGGCggggcGCCCCCCgGCGcCa -3'
miRNA:   3'- -CGgCag--CGGGCCGa----CGGGGGG-CGCuG- -5'
23560 5' -66.9 NC_005261.1 + 133795 0.66 0.438595
Target:  5'- cGCauccCGCCCgGGCUGCUCgaCgGCGACg -3'
miRNA:   3'- -CGgca-GCGGG-CCGACGGGg-GgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 61137 0.66 0.421956
Target:  5'- gGCCGUcgagagcagCGUCCGcGCcagcGCCUCgCGCGGCa -3'
miRNA:   3'- -CGGCA---------GCGGGC-CGa---CGGGGgGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 48382 0.66 0.413781
Target:  5'- cGCCGaugaCGCCgCGGCccuccgGCCCggCCGCGAa -3'
miRNA:   3'- -CGGCa---GCGG-GCCGa-----CGGGg-GGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 95380 0.66 0.438595
Target:  5'- cGCgGcCcCCCGGCgcGCCgCUCGCGGCc -3'
miRNA:   3'- -CGgCaGcGGGCCGa-CGGgGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 57261 0.66 0.437754
Target:  5'- cGCCGcacacgcuccgcaUCGCgCGGCaGCUgCUCGCGAg -3'
miRNA:   3'- -CGGC-------------AGCGgGCCGaCGGgGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 50805 0.66 0.438595
Target:  5'- cGCCGcCGCCauGacggGCUCCgCGCGGCu -3'
miRNA:   3'- -CGGCaGCGGgcCga--CGGGGgGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 11199 0.66 0.437754
Target:  5'- cGuuGUUGUuuuuaaauaaacgCCGcGUgGCCCCCCGCGGg -3'
miRNA:   3'- -CggCAGCG-------------GGC-CGaCGGGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 66264 0.66 0.38985
Target:  5'- uGCCGcgCGCUCcGC-GCCCCgCGcCGACg -3'
miRNA:   3'- -CGGCa-GCGGGcCGaCGGGGgGC-GCUG- -5'
23560 5' -66.9 NC_005261.1 + 82238 0.66 0.438595
Target:  5'- cGCCccCGCCgCGGUUGCCgaUgGCGACg -3'
miRNA:   3'- -CGGcaGCGG-GCCGACGGggGgCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.