miRNA display CGI


Results 61 - 80 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 11720 0.67 0.382077
Target:  5'- cGCgGgCGCCCaGGCaGaCCgCCUGCGGCa -3'
miRNA:   3'- -CGgCaGCGGG-CCGaC-GGgGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 11924 0.69 0.260442
Target:  5'- gGCCGgcgGCUgCGGCgGCCCgCgCCGCGGCg -3'
miRNA:   3'- -CGGCag-CGG-GCCGaCGGG-G-GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 12215 0.68 0.297105
Target:  5'- uGCCGcCGCCgCuGCUGCCgCCCCauGCG-Ca -3'
miRNA:   3'- -CGGCaGCGG-GcCGACGG-GGGG--CGCuG- -5'
23560 5' -66.9 NC_005261.1 + 12265 0.69 0.284456
Target:  5'- cCCGUCGCCgagcgaaGuGCUGCCgugcgaCCCCGCGcCa -3'
miRNA:   3'- cGGCAGCGGg------C-CGACGG------GGGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 12321 0.71 0.198245
Target:  5'- aGCCGgcgggCGCgcgcuuggCCGGCgcgGCCgCCgCCGCGGCg -3'
miRNA:   3'- -CGGCa----GCG--------GGCCGa--CGG-GG-GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 12394 0.69 0.272237
Target:  5'- gGCUGggcuugcaaaGCCCGGUccgGCCCCgCuCGCGGCg -3'
miRNA:   3'- -CGGCag--------CGGGCCGa--CGGGG-G-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 12448 0.66 0.430228
Target:  5'- cCCGuUCGCagCGGCcuugGCCUuagccgagCCCGCGGCa -3'
miRNA:   3'- cGGC-AGCGg-GCCGa---CGGG--------GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 12535 0.72 0.168265
Target:  5'- gGCCGUCGCCgGGCcaaGCCCggcaaaCCCauucgGCGGCa -3'
miRNA:   3'- -CGGCAGCGGgCCGa--CGGG------GGG-----CGCUG- -5'
23560 5' -66.9 NC_005261.1 + 12798 0.66 0.438595
Target:  5'- aGCuCGUCGUCgGcgucGCUGCcguCCUCCGCGAa -3'
miRNA:   3'- -CG-GCAGCGGgC----CGACG---GGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 12918 0.68 0.297105
Target:  5'- cGCCGagGCCgCGGagcGCCCgcggguccggcgCCCGCGGCc -3'
miRNA:   3'- -CGGCagCGG-GCCga-CGGG------------GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 13294 0.69 0.284456
Target:  5'- cGCCGgcacagcgCGCgCGGCgGagCCUCCGCGGCu -3'
miRNA:   3'- -CGGCa-------GCGgGCCGaCg-GGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 13788 0.66 0.421956
Target:  5'- cGCCc-UGCCCGGCgggGUCCCaaGCGuCg -3'
miRNA:   3'- -CGGcaGCGGGCCGa--CGGGGggCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 13981 0.69 0.260442
Target:  5'- cGgCGcCGCgCGGC-GCCUgCCCGCGGCg -3'
miRNA:   3'- -CgGCaGCGgGCCGaCGGG-GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 14506 0.68 0.340493
Target:  5'- aGCCGcgCgaaaccaauuuaacaGCCCGGCgguggcgcgGCCgCCCgGCGACc -3'
miRNA:   3'- -CGGCa-G---------------CGGGCCGa--------CGG-GGGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 14742 0.68 0.31689
Target:  5'- cGCUGgugCGCCCGG-UGUCCCUgGUGGa -3'
miRNA:   3'- -CGGCa--GCGGGCCgACGGGGGgCGCUg -5'
23560 5' -66.9 NC_005261.1 + 15260 0.7 0.232778
Target:  5'- gGCCGcgaUCGcCCCGGCgGCgCCgCCGgGGCg -3'
miRNA:   3'- -CGGC---AGC-GGGCCGaCGgGG-GGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 15367 0.68 0.31689
Target:  5'- cCCGgcggCGCUCGGC-GCCCUCgGCGcCg -3'
miRNA:   3'- cGGCa---GCGGGCCGaCGGGGGgCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 15924 0.66 0.438595
Target:  5'- cGCCG--GCCCgGGC-GUCgCCUGCGGCa -3'
miRNA:   3'- -CGGCagCGGG-CCGaCGGgGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 16400 0.76 0.084797
Target:  5'- cGUCGUCGCCgGGCggugcgggagagGCCCCCuCGaCGGCg -3'
miRNA:   3'- -CGGCAGCGGgCCGa-----------CGGGGG-GC-GCUG- -5'
23560 5' -66.9 NC_005261.1 + 16700 0.68 0.337651
Target:  5'- cGCCGUcgauguacagcgCGCgCCGGUacugGCCCUCgGCGAg -3'
miRNA:   3'- -CGGCA------------GCG-GGCCGa---CGGGGGgCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.