miRNA display CGI


Results 41 - 60 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 6227 0.67 0.380535
Target:  5'- gGCgGUCcaggugcGCCCGGggagggcCUGCCcgCCCCGCGGg -3'
miRNA:   3'- -CGgCAG-------CGGGCC-------GACGG--GGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 6450 0.66 0.397726
Target:  5'- gGCCG--GCCgGGCUGCCcgcacaCCCCGCc-- -3'
miRNA:   3'- -CGGCagCGGgCCGACGG------GGGGCGcug -5'
23560 5' -66.9 NC_005261.1 + 6477 0.7 0.243535
Target:  5'- cGCCG-CGCCggcCGGCgUGCCgUCCGCGuGCa -3'
miRNA:   3'- -CGGCaGCGG---GCCG-ACGGgGGGCGC-UG- -5'
23560 5' -66.9 NC_005261.1 + 7669 0.7 0.232778
Target:  5'- cGCUucCGCCCGGCggGCCgCCCagcagauaaaaCGCGACg -3'
miRNA:   3'- -CGGcaGCGGGCCGa-CGG-GGG-----------GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 8050 0.66 0.413781
Target:  5'- gGCCGUCagcuCCCuGCUGCCggCgCCGCuGACg -3'
miRNA:   3'- -CGGCAGc---GGGcCGACGG--GgGGCG-CUG- -5'
23560 5' -66.9 NC_005261.1 + 8841 0.68 0.31689
Target:  5'- gGCCGUCucacaGCCCGGUgGaCCCgaagCCgCGCGACc -3'
miRNA:   3'- -CGGCAG-----CGGGCCGaC-GGG----GG-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 9867 0.66 0.417039
Target:  5'- aGCCGgccUGcCCCGGCgaGCCCacccuagccggcccgCCCGgGGCa -3'
miRNA:   3'- -CGGCa--GC-GGGCCGa-CGGG---------------GGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 9952 0.69 0.262767
Target:  5'- aGCCGgccCGCCCGGggcaagcccGCCCCCCcggacgcgccucggcGCGGCc -3'
miRNA:   3'- -CGGCa--GCGGGCCga-------CGGGGGG---------------CGCUG- -5'
23560 5' -66.9 NC_005261.1 + 10137 0.69 0.254702
Target:  5'- cGCCGccaugaGCCaCGGCcagcccUGCCCCaCCuGCGACg -3'
miRNA:   3'- -CGGCag----CGG-GCCG------ACGGGG-GG-CGCUG- -5'
23560 5' -66.9 NC_005261.1 + 10140 0.69 0.254702
Target:  5'- cGCCGcUCGCCCGuuaacccgcucGCUcGCCCgCCCGCc-- -3'
miRNA:   3'- -CGGC-AGCGGGC-----------CGA-CGGG-GGGCGcug -5'
23560 5' -66.9 NC_005261.1 + 10432 0.68 0.303592
Target:  5'- cCCGcCGCCgCGGCgccgGCCCgCCGCu-- -3'
miRNA:   3'- cGGCaGCGG-GCCGa---CGGGgGGCGcug -5'
23560 5' -66.9 NC_005261.1 + 10496 0.69 0.272237
Target:  5'- aCCGgcuuuugCGCgCGGCcGCCgcugcgggCCCCGCGGCg -3'
miRNA:   3'- cGGCa------GCGgGCCGaCGG--------GGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 10541 0.69 0.284456
Target:  5'- cGCUGUCGCCCccGGCgcGCCUgCCG-GGCc -3'
miRNA:   3'- -CGGCAGCGGG--CCGa-CGGGgGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 10569 0.67 0.359385
Target:  5'- cGCCGUCccgccccgaaCCCGcGC-GCCCCCCgGCGcCg -3'
miRNA:   3'- -CGGCAGc---------GGGC-CGaCGGGGGG-CGCuG- -5'
23560 5' -66.9 NC_005261.1 + 10608 0.7 0.232778
Target:  5'- cGCCGUCGCguCCGGCcgGCCgCUagcguucagCGCGGCc -3'
miRNA:   3'- -CGGCAGCG--GGCCGa-CGGgGG---------GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 10929 0.68 0.300984
Target:  5'- gGCCccacCGCCagccggcggggagGGCUGCCCCC-GCGGCg -3'
miRNA:   3'- -CGGca--GCGGg------------CCGACGGGGGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 11024 0.78 0.069812
Target:  5'- cUCGUCGCCgGGCccGUCCCCCgGCGGCa -3'
miRNA:   3'- cGGCAGCGGgCCGa-CGGGGGG-CGCUG- -5'
23560 5' -66.9 NC_005261.1 + 11166 0.68 0.330622
Target:  5'- cCCGuaucUCGCCgCGGCcccgGCCCUCCGUcGCg -3'
miRNA:   3'- cGGC----AGCGG-GCCGa---CGGGGGGCGcUG- -5'
23560 5' -66.9 NC_005261.1 + 11199 0.66 0.437754
Target:  5'- cGuuGUUGUuuuuaaauaaacgCCGcGUgGCCCCCCGCGGg -3'
miRNA:   3'- -CggCAGCG-------------GGC-CGaCGGGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 11281 0.73 0.135718
Target:  5'- uGCCGcccccgCGCCCGGC-GCCCCUgGCcGCg -3'
miRNA:   3'- -CGGCa-----GCGGGCCGaCGGGGGgCGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.