miRNA display CGI


Results 41 - 60 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 132409 0.69 0.254702
Target:  5'- cGCCGaCGCCUGGCccgcGCaCCCCUGCu-- -3'
miRNA:   3'- -CGGCaGCGGGCCGa---CG-GGGGGCGcug -5'
23560 5' -66.9 NC_005261.1 + 132376 0.68 0.303592
Target:  5'- cGCCG-CGCUCGcggcGCUGUUCCCCGaGGCc -3'
miRNA:   3'- -CGGCaGCGGGC----CGACGGGGGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 132082 0.73 0.153014
Target:  5'- cGCCGUCGCC--GCUGCCgCggagggcggCCGCGACg -3'
miRNA:   3'- -CGGCAGCGGgcCGACGGgG---------GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 131823 0.66 0.438595
Target:  5'- cGCCGcCGCUugacgCGGC-GCCCgCCUGCuGCg -3'
miRNA:   3'- -CGGCaGCGG-----GCCGaCGGG-GGGCGcUG- -5'
23560 5' -66.9 NC_005261.1 + 131784 0.7 0.243535
Target:  5'- uGCgGgcaGCCCGGCcgGCCCCCggaccgcccuCGCGAg -3'
miRNA:   3'- -CGgCag-CGGGCCGa-CGGGGG----------GCGCUg -5'
23560 5' -66.9 NC_005261.1 + 131613 0.71 0.193693
Target:  5'- cGCaCGUacgcgCGCCUGGC-GCCCgCCGCGAg -3'
miRNA:   3'- -CG-GCA-----GCGGGCCGaCGGGgGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 131564 1.1 0.000246
Target:  5'- cGCCGUCGCCCGGCUGCCCCCCGCGACg -3'
miRNA:   3'- -CGGCAGCGGGCCGACGGGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 131423 0.68 0.323702
Target:  5'- uGCCGgcagCgGCgCCGGC-GCCCCCCuuGCGcCg -3'
miRNA:   3'- -CGGCa---G-CG-GGCCGaCGGGGGG--CGCuG- -5'
23560 5' -66.9 NC_005261.1 + 130263 0.7 0.242988
Target:  5'- gGCCG-CGCUCGGCgaucgauuUGCCCaCCCuggggaggacaagGCGGCg -3'
miRNA:   3'- -CGGCaGCGGGCCG--------ACGGG-GGG-------------CGCUG- -5'
23560 5' -66.9 NC_005261.1 + 129821 0.7 0.236497
Target:  5'- cGCCcugCGCCCGGaUGCCCagcgcgcgcuccagCaCCGCGACg -3'
miRNA:   3'- -CGGca-GCGGGCCgACGGG--------------G-GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 129718 0.72 0.160476
Target:  5'- gGCC-UCGCUgcgauUGGCcgGCCCCCCGCuGGCg -3'
miRNA:   3'- -CGGcAGCGG-----GCCGa-CGGGGGGCG-CUG- -5'
23560 5' -66.9 NC_005261.1 + 129407 0.7 0.22963
Target:  5'- cGCCcccUUGCCCGGCgggcgccccuucaaGCCCUCgGCGGCu -3'
miRNA:   3'- -CGGc--AGCGGGCCGa-------------CGGGGGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 129337 0.68 0.310187
Target:  5'- cGCCGaccUCGCCgCGGUagcGCCCCcuuCCGCGcGCg -3'
miRNA:   3'- -CGGC---AGCGG-GCCGa--CGGGG---GGCGC-UG- -5'
23560 5' -66.9 NC_005261.1 + 128785 0.75 0.103832
Target:  5'- cGCCGUUGUCUGGgC-GCCCgggCCCGCGGCg -3'
miRNA:   3'- -CGGCAGCGGGCC-GaCGGG---GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 128125 0.67 0.352033
Target:  5'- gGCUGUCGCCgCcGCUGCCggggCGCGGCg -3'
miRNA:   3'- -CGGCAGCGG-GcCGACGGggg-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 127760 0.71 0.214918
Target:  5'- gGCCGcggcgggcgcgaagaCGCCCGGCUGCUcgagcggcgggccggCgCCGCGGCg -3'
miRNA:   3'- -CGGCa--------------GCGGGCCGACGG---------------GgGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 127272 0.67 0.382077
Target:  5'- gGCCGggccCGCCCgccgcgggGGCaGCCcuCCCCGcCGGCu -3'
miRNA:   3'- -CGGCa---GCGGG--------CCGaCGG--GGGGC-GCUG- -5'
23560 5' -66.9 NC_005261.1 + 126311 0.7 0.222424
Target:  5'- gGCCGcCGCagccgCCGGCcggGCCgggCCCGCGGCg -3'
miRNA:   3'- -CGGCaGCG-----GGCCGa--CGGg--GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 125906 0.71 0.193693
Target:  5'- cGCCGgccaagcgcgCGCCCgccGGCUacgcGCCCgugCCCGCGGCg -3'
miRNA:   3'- -CGGCa---------GCGGG---CCGA----CGGG---GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 125695 0.67 0.374407
Target:  5'- uGCCGggcuugGCCCGGCgacGgCCgCCGCGGg -3'
miRNA:   3'- -CGGCag----CGGGCCGa--CgGGgGGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.