miRNA display CGI


Results 41 - 60 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 6133 0.75 0.111753
Target:  5'- aGCgCGUCGC--GGCcGCCCUCCGCGGCa -3'
miRNA:   3'- -CG-GCAGCGggCCGaCGGGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 137695 0.75 0.111753
Target:  5'- aGCCGcCGUCCGccCUGCCCCCCGCc-- -3'
miRNA:   3'- -CGGCaGCGGGCc-GACGGGGGGCGcug -5'
23560 5' -66.9 NC_005261.1 + 94427 0.75 0.111753
Target:  5'- gGgCG-CGCCCGGC-GCCCccucaCCCGCGGCg -3'
miRNA:   3'- -CgGCaGCGGGCCGaCGGG-----GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 47354 0.75 0.114517
Target:  5'- uGCCGUCGCCCagcgcgcagacGGCgucguaggGCaUCCCCGCGAa -3'
miRNA:   3'- -CGGCAGCGGG-----------CCGa-------CG-GGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 68464 0.75 0.114517
Target:  5'- gGCUcaGUC-CCCGGCgccGCCCCCCGCG-Cu -3'
miRNA:   3'- -CGG--CAGcGGGCCGa--CGGGGGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 34352 0.74 0.117345
Target:  5'- gGCgCGcCGCCCGGCggcGCCgCCCCGCcGCc -3'
miRNA:   3'- -CG-GCaGCGGGCCGa--CGG-GGGGCGcUG- -5'
23560 5' -66.9 NC_005261.1 + 133841 0.74 0.120237
Target:  5'- cGCCGcCGCCCGGCcgcgUGCgCUUCgGCGGCg -3'
miRNA:   3'- -CGGCaGCGGGCCG----ACG-GGGGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 29324 0.74 0.120237
Target:  5'- cGCCGcCGCCCGGCcgcgUGCgCUUCgGCGGCg -3'
miRNA:   3'- -CGGCaGCGGGCCG----ACG-GGGGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 103093 0.74 0.120237
Target:  5'- gGCCGggcccaGCCCGGCcagcGCCCCCgGCGcCa -3'
miRNA:   3'- -CGGCag----CGGGCCGa---CGGGGGgCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 110946 0.74 0.123196
Target:  5'- -gCGcCGCCCGGCgGCCCaCCCGgGAg -3'
miRNA:   3'- cgGCaGCGGGCCGaCGGG-GGGCgCUg -5'
23560 5' -66.9 NC_005261.1 + 112465 0.74 0.123196
Target:  5'- gGCCGUgcuaaacaUGCgCGGCaUGCUCgCCCGCGACg -3'
miRNA:   3'- -CGGCA--------GCGgGCCG-ACGGG-GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 68786 0.74 0.126222
Target:  5'- cGCCGcagcUCGUCCGcGCUGCCCgucUCCGUGAUg -3'
miRNA:   3'- -CGGC----AGCGGGC-CGACGGG---GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 40026 0.74 0.132482
Target:  5'- uGCCGUggcggCGCCC-GCUGCCCgCCGCGcCc -3'
miRNA:   3'- -CGGCA-----GCGGGcCGACGGGgGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 35922 0.74 0.132482
Target:  5'- cGCCG-CGCCgCGGCgcgcgGCUacgaCCCGCGGCc -3'
miRNA:   3'- -CGGCaGCGG-GCCGa----CGGg---GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 94036 0.74 0.132482
Target:  5'- cUCGgcgGCCCGGCgcGCCCCCCcaGCGGCg -3'
miRNA:   3'- cGGCag-CGGGCCGa-CGGGGGG--CGCUG- -5'
23560 5' -66.9 NC_005261.1 + 104348 0.74 0.132482
Target:  5'- gGCCGUCGCgCaGC-GCCgCCCGCGAg -3'
miRNA:   3'- -CGGCAGCGgGcCGaCGGgGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 60267 0.73 0.135392
Target:  5'- gGCCGUgaagaggCGCCCGGg-GUccgCCCCCGCGGCc -3'
miRNA:   3'- -CGGCA-------GCGGGCCgaCG---GGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 124258 0.73 0.135718
Target:  5'- cGCCGcgcggcgcCGCCCGcGC-GCCCCggCCGCGACa -3'
miRNA:   3'- -CGGCa-------GCGGGC-CGaCGGGG--GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 94202 0.73 0.135718
Target:  5'- gGCCGcCGCgCGGCgGCCgCCCGCcGCg -3'
miRNA:   3'- -CGGCaGCGgGCCGaCGGgGGGCGcUG- -5'
23560 5' -66.9 NC_005261.1 + 11281 0.73 0.135718
Target:  5'- uGCCGcccccgCGCCCGGC-GCCCCUgGCcGCg -3'
miRNA:   3'- -CGGCa-----GCGGGCCGaCGGGGGgCGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.