miRNA display CGI


Results 41 - 60 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 82238 0.66 0.438595
Target:  5'- cGCCccCGCCgCGGUUGCCgaUgGCGACg -3'
miRNA:   3'- -CGGcaGCGG-GCCGACGGggGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 135552 0.66 0.392988
Target:  5'- aGCCGgcgCGCCgccggguccccagcgCGGCgggagccgccgcUGCCCgCCCGCGuGCu -3'
miRNA:   3'- -CGGCa--GCGG---------------GCCG------------ACGGG-GGGCGC-UG- -5'
23560 5' -66.9 NC_005261.1 + 67137 0.66 0.425254
Target:  5'- cGCCGUguacgccuucucggGCCCGGaCgccccGCCCgCCgCGCGGCg -3'
miRNA:   3'- -CGGCAg-------------CGGGCC-Ga----CGGG-GG-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 110967 0.66 0.397726
Target:  5'- gGCCG--GCCgGGCUGCCcgcacaCCCCGCc-- -3'
miRNA:   3'- -CGGCagCGGgCCGACGG------GGGGCGcug -5'
23560 5' -66.9 NC_005261.1 + 81509 0.66 0.430228
Target:  5'- cGCCGaugCGCUCGGCgugGUCCCUuagcaGCGuCg -3'
miRNA:   3'- -CGGCa--GCGGGCCGa--CGGGGGg----CGCuG- -5'
23560 5' -66.9 NC_005261.1 + 69135 0.66 0.405703
Target:  5'- cCCGUaGCagCUGGCcaUGCCCCagCGCGACa -3'
miRNA:   3'- cGGCAgCG--GGCCG--ACGGGGg-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 65670 0.66 0.406507
Target:  5'- cUCGgCGCCCGGCguuuuuuccucgcccGUCCCCUGCcGCg -3'
miRNA:   3'- cGGCaGCGGGCCGa--------------CGGGGGGCGcUG- -5'
23560 5' -66.9 NC_005261.1 + 12448 0.66 0.430228
Target:  5'- cCCGuUCGCagCGGCcuugGCCUuagccgagCCCGCGGCa -3'
miRNA:   3'- cGGC-AGCGg-GCCGa---CGGG--------GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 5863 0.66 0.405703
Target:  5'- cGCCGcgaGCgCGGCgaGCgCgCCGCGGCg -3'
miRNA:   3'- -CGGCag-CGgGCCGa-CGgGgGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 55406 0.66 0.429397
Target:  5'- uGCCG-CGCgggaggcgcggcaCCGGCUGCagguggCCGCGGCg -3'
miRNA:   3'- -CGGCaGCG-------------GGCCGACGggg---GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 70567 0.66 0.430228
Target:  5'- aCCG-CGCCUGGC-GCCgCgCGCgGACg -3'
miRNA:   3'- cGGCaGCGGGCCGaCGGgGgGCG-CUG- -5'
23560 5' -66.9 NC_005261.1 + 109516 0.66 0.405703
Target:  5'- cGCCGagGCCCccggGCCCCCCGgGu- -3'
miRNA:   3'- -CGGCagCGGGccgaCGGGGGGCgCug -5'
23560 5' -66.9 NC_005261.1 + 106701 0.66 0.405703
Target:  5'- aGUCGgCGCucagcagcagCCGGUUGCCCagcgCCGCGAg -3'
miRNA:   3'- -CGGCaGCG----------GGCCGACGGGg---GGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 85957 0.66 0.397726
Target:  5'- cGCCGUCGugaccaccgcccCCCGGCgcggacagcGCCCuCCCaCGAa -3'
miRNA:   3'- -CGGCAGC------------GGGCCGa--------CGGG-GGGcGCUg -5'
23560 5' -66.9 NC_005261.1 + 50289 0.66 0.397726
Target:  5'- gGCCGUggcggCGCgCGGCUccagGCCCCgggUgGCGGCa -3'
miRNA:   3'- -CGGCA-----GCGgGCCGA----CGGGG---GgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 89902 0.66 0.397726
Target:  5'- cGCCGcgcgCGCCCccgagcccgGGCccgacgcGCCCCCCGaGGCc -3'
miRNA:   3'- -CGGCa---GCGGG---------CCGa------CGGGGGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 84562 0.66 0.405703
Target:  5'- cGCUGUCGaggccgcgacCCgCGGCcagGCCgCCUGCGAUc -3'
miRNA:   3'- -CGGCAGC----------GG-GCCGa--CGGgGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 38036 0.66 0.38985
Target:  5'- uGCUGgcCGCCaC-GCUGCCCCgCCGCcACg -3'
miRNA:   3'- -CGGCa-GCGG-GcCGACGGGG-GGCGcUG- -5'
23560 5' -66.9 NC_005261.1 + 44283 0.66 0.427737
Target:  5'- gGCCGacCGCCCGGaggcggcGCCCgcggacggcgcaagCCCGCGGg -3'
miRNA:   3'- -CGGCa-GCGGGCCga-----CGGG--------------GGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 32980 0.66 0.38985
Target:  5'- aGCCuGUCGCgCGGaUGCCgCCgcagaucacggCCGCGGCc -3'
miRNA:   3'- -CGG-CAGCGgGCCgACGG-GG-----------GGCGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.