miRNA display CGI


Results 41 - 60 of 617 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 115492 0.66 0.430228
Target:  5'- cGCCGcCGCCCcgcgcccgacuGGCgcugGUCCUCCGgcuccuCGACg -3'
miRNA:   3'- -CGGCaGCGGG-----------CCGa---CGGGGGGC------GCUG- -5'
23560 5' -66.9 NC_005261.1 + 8050 0.66 0.413781
Target:  5'- gGCCGUCagcuCCCuGCUGCCggCgCCGCuGACg -3'
miRNA:   3'- -CGGCAGc---GGGcCGACGG--GgGGCG-CUG- -5'
23560 5' -66.9 NC_005261.1 + 65670 0.66 0.406507
Target:  5'- cUCGgCGCCCGGCguuuuuuccucgcccGUCCCCUGCcGCg -3'
miRNA:   3'- cGGCaGCGGGCCGa--------------CGGGGGGCGcUG- -5'
23560 5' -66.9 NC_005261.1 + 50289 0.66 0.397726
Target:  5'- gGCCGUggcggCGCgCGGCUccagGCCCCgggUgGCGGCa -3'
miRNA:   3'- -CGGCA-----GCGgGCCGA----CGGGG---GgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 89041 0.66 0.430228
Target:  5'- cGCUGUCggccgaggGCCUGGCcgagcaCCCCgCCGUGGCc -3'
miRNA:   3'- -CGGCAG--------CGGGCCGac----GGGG-GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 109089 0.66 0.438595
Target:  5'- cGCgGgcggGUCCGGCggggcGCCCCCCgGCGcCa -3'
miRNA:   3'- -CGgCag--CGGGCCGa----CGGGGGG-CGCuG- -5'
23560 5' -66.9 NC_005261.1 + 79941 0.66 0.421956
Target:  5'- cCCG-CGCCCcccGGCgcgccgGCCCCgugagCGCGGCg -3'
miRNA:   3'- cGGCaGCGGG---CCGa-----CGGGGg----GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 38036 0.66 0.38985
Target:  5'- uGCUGgcCGCCaC-GCUGCCCCgCCGCcACg -3'
miRNA:   3'- -CGGCa-GCGG-GcCGACGGGG-GGCGcUG- -5'
23560 5' -66.9 NC_005261.1 + 84562 0.66 0.405703
Target:  5'- cGCUGUCGaggccgcgacCCgCGGCcagGCCgCCUGCGAUc -3'
miRNA:   3'- -CGGCAGC----------GG-GCCGa--CGGgGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 89902 0.66 0.397726
Target:  5'- cGCCGcgcgCGCCCccgagcccgGGCccgacgcGCCCCCCGaGGCc -3'
miRNA:   3'- -CGGCa---GCGGG---------CCGa------CGGGGGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 302 0.66 0.397726
Target:  5'- aGCCGcCGCCgCaGCcggGCCCgCUCGCGGg -3'
miRNA:   3'- -CGGCaGCGG-GcCGa--CGGG-GGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 85957 0.66 0.397726
Target:  5'- cGCCGUCGugaccaccgcccCCCGGCgcggacagcGCCCuCCCaCGAa -3'
miRNA:   3'- -CGGCAGC------------GGGCCGa--------CGGG-GGGcGCUg -5'
23560 5' -66.9 NC_005261.1 + 106701 0.66 0.405703
Target:  5'- aGUCGgCGCucagcagcagCCGGUUGCCCagcgCCGCGAg -3'
miRNA:   3'- -CGGCaGCG----------GGCCGACGGGg---GGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 29193 0.66 0.421956
Target:  5'- gGCgGcCGCgCGGCUGCgCgCCaCgGCGGCg -3'
miRNA:   3'- -CGgCaGCGgGCCGACG-G-GG-GgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 70567 0.66 0.430228
Target:  5'- aCCG-CGCCUGGC-GCCgCgCGCgGACg -3'
miRNA:   3'- cGGCaGCGGGCCGaCGGgGgGCG-CUG- -5'
23560 5' -66.9 NC_005261.1 + 58154 0.66 0.430228
Target:  5'- cGCCGguccgCGUCCcccacGCCCCCCGCGcCc -3'
miRNA:   3'- -CGGCa----GCGGGccga-CGGGGGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 114441 0.66 0.417039
Target:  5'- aGCCGgccUGcCCCGGCgaGCCCacccuagccggcccgCCCGgGGCa -3'
miRNA:   3'- -CGGCa--GC-GGGCCGa-CGGG---------------GGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 12448 0.66 0.430228
Target:  5'- cCCGuUCGCagCGGCcuugGCCUuagccgagCCCGCGGCa -3'
miRNA:   3'- cGGC-AGCGg-GCCGa---CGGG--------GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 109516 0.66 0.405703
Target:  5'- cGCCGagGCCCccggGCCCCCCGgGu- -3'
miRNA:   3'- -CGGCagCGGGccgaCGGGGGGCgCug -5'
23560 5' -66.9 NC_005261.1 + 5863 0.66 0.405703
Target:  5'- cGCCGcgaGCgCGGCgaGCgCgCCGCGGCg -3'
miRNA:   3'- -CGGCag-CGgGCCGa-CGgGgGGCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.