miRNA display CGI


Results 21 - 40 of 617 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 95307 0.66 0.412968
Target:  5'- uCCGcacccacUCGCCCGGCgGCCCCggaGCGcCc -3'
miRNA:   3'- cGGC-------AGCGGGCCGaCGGGGgg-CGCuG- -5'
23560 5' -66.9 NC_005261.1 + 89902 0.66 0.397726
Target:  5'- cGCCGcgcgCGCCCccgagcccgGGCccgacgcGCCCCCCGaGGCc -3'
miRNA:   3'- -CGGCa---GCGGG---------CCGa------CGGGGGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 69135 0.66 0.405703
Target:  5'- cCCGUaGCagCUGGCcaUGCCCCagCGCGACa -3'
miRNA:   3'- cGGCAgCG--GGCCG--ACGGGGg-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 85957 0.66 0.397726
Target:  5'- cGCCGUCGugaccaccgcccCCCGGCgcggacagcGCCCuCCCaCGAa -3'
miRNA:   3'- -CGGCAGC------------GGGCCGa--------CGGG-GGGcGCUg -5'
23560 5' -66.9 NC_005261.1 + 135695 0.66 0.413781
Target:  5'- cGCCGcggCGCUggCGGCcuacUGCCgCCCCgagucGCGGCg -3'
miRNA:   3'- -CGGCa--GCGG--GCCG----ACGG-GGGG-----CGCUG- -5'
23560 5' -66.9 NC_005261.1 + 3187 0.66 0.397726
Target:  5'- cGCUGcCGCCgcaGGCgucgGCCUCgccgCCGCGGCc -3'
miRNA:   3'- -CGGCaGCGGg--CCGa---CGGGG----GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 110967 0.66 0.397726
Target:  5'- gGCCG--GCCgGGCUGCCcgcacaCCCCGCc-- -3'
miRNA:   3'- -CGGCagCGGgCCGACGG------GGGGCGcug -5'
23560 5' -66.9 NC_005261.1 + 106701 0.66 0.405703
Target:  5'- aGUCGgCGCucagcagcagCCGGUUGCCCagcgCCGCGAg -3'
miRNA:   3'- -CGGCaGCG----------GGCCGACGGGg---GGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 64168 0.66 0.405703
Target:  5'- gGCCGcgUCGCgCaGCUGCCgcagCCCCcCGGCg -3'
miRNA:   3'- -CGGC--AGCGgGcCGACGG----GGGGcGCUG- -5'
23560 5' -66.9 NC_005261.1 + 85867 0.66 0.413781
Target:  5'- gGCCGcCGCCgCgGGCUccGgCUCCgGCGGCa -3'
miRNA:   3'- -CGGCaGCGG-G-CCGA--CgGGGGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 67137 0.66 0.425254
Target:  5'- cGCCGUguacgccuucucggGCCCGGaCgccccGCCCgCCgCGCGGCg -3'
miRNA:   3'- -CGGCAg-------------CGGGCC-Ga----CGGG-GG-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 32980 0.66 0.38985
Target:  5'- aGCCuGUCGCgCGGaUGCCgCCgcagaucacggCCGCGGCc -3'
miRNA:   3'- -CGG-CAGCGgGCCgACGG-GG-----------GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 61137 0.66 0.421956
Target:  5'- gGCCGUcgagagcagCGUCCGcGCcagcGCCUCgCGCGGCa -3'
miRNA:   3'- -CGGCA---------GCGGGC-CGa---CGGGGgGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 8050 0.66 0.413781
Target:  5'- gGCCGUCagcuCCCuGCUGCCggCgCCGCuGACg -3'
miRNA:   3'- -CGGCAGc---GGGcCGACGG--GgGGCG-CUG- -5'
23560 5' -66.9 NC_005261.1 + 5863 0.66 0.405703
Target:  5'- cGCCGcgaGCgCGGCgaGCgCgCCGCGGCg -3'
miRNA:   3'- -CGGCag-CGgGCCGa-CGgGgGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 63800 0.66 0.413781
Target:  5'- cGCCGggggggCGCUcuccuCGGCccuCCCgCCCGCGGCc -3'
miRNA:   3'- -CGGCa-----GCGG-----GCCGac-GGG-GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 109516 0.66 0.405703
Target:  5'- cGCCGagGCCCccggGCCCCCCGgGu- -3'
miRNA:   3'- -CGGCagCGGGccgaCGGGGGGCgCug -5'
23560 5' -66.9 NC_005261.1 + 66264 0.66 0.38985
Target:  5'- uGCCGcgCGCUCcGC-GCCCCgCGcCGACg -3'
miRNA:   3'- -CGGCa-GCGGGcCGaCGGGGgGC-GCUG- -5'
23560 5' -66.9 NC_005261.1 + 29193 0.66 0.421956
Target:  5'- gGCgGcCGCgCGGCUGCgCgCCaCgGCGGCg -3'
miRNA:   3'- -CGgCaGCGgGCCGACG-G-GG-GgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 79941 0.66 0.421956
Target:  5'- cCCG-CGCCCcccGGCgcgccgGCCCCgugagCGCGGCg -3'
miRNA:   3'- cGGCaGCGGG---CCGa-----CGGGGg----GCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.