Results 21 - 40 of 617 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 67137 | 0.66 | 0.425254 |
Target: 5'- cGCCGUguacgccuucucggGCCCGGaCgccccGCCCgCCgCGCGGCg -3' miRNA: 3'- -CGGCAg-------------CGGGCC-Ga----CGGG-GG-GCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 105860 | 0.66 | 0.413781 |
Target: 5'- cGCCG-CGCCUGcaccaGC-GUCUCCCGCGGg -3' miRNA: 3'- -CGGCaGCGGGC-----CGaCGGGGGGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 106701 | 0.66 | 0.405703 |
Target: 5'- aGUCGgCGCucagcagcagCCGGUUGCCCagcgCCGCGAg -3' miRNA: 3'- -CGGCaGCG----------GGCCGACGGGg---GGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 19365 | 0.66 | 0.397726 |
Target: 5'- gGCCGagGCCagggccgcgGGCgcgccGCCCUCCGCGcCg -3' miRNA: 3'- -CGGCagCGGg--------CCGa----CGGGGGGCGCuG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 302 | 0.66 | 0.397726 |
Target: 5'- aGCCGcCGCCgCaGCcggGCCCgCUCGCGGg -3' miRNA: 3'- -CGGCaGCGG-GcCGa--CGGG-GGGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 16957 | 0.66 | 0.421956 |
Target: 5'- -gCGagGCCgGGCgGCCgCCCCgucuGCGGCg -3' miRNA: 3'- cgGCagCGGgCCGaCGG-GGGG----CGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 137985 | 0.66 | 0.397726 |
Target: 5'- aGCCGcCGCCgCaGCcggGCCCgCUCGCGGg -3' miRNA: 3'- -CGGCaGCGG-GcCGa--CGGG-GGGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 123390 | 0.66 | 0.397726 |
Target: 5'- cGCCGcCGCCUGcuGCcgUGCUCCCgGCG-Ca -3' miRNA: 3'- -CGGCaGCGGGC--CG--ACGGGGGgCGCuG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 89902 | 0.66 | 0.397726 |
Target: 5'- cGCCGcgcgCGCCCccgagcccgGGCccgacgcGCCCCCCGaGGCc -3' miRNA: 3'- -CGGCa---GCGGG---------CCGa------CGGGGGGCgCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 8050 | 0.66 | 0.413781 |
Target: 5'- gGCCGUCagcuCCCuGCUGCCggCgCCGCuGACg -3' miRNA: 3'- -CGGCAGc---GGGcCGACGG--GgGGCG-CUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 83724 | 0.66 | 0.388287 |
Target: 5'- cGCCGUCGCCggagGGCgccugcguuugcGCCUgCCGCccGACg -3' miRNA: 3'- -CGGCAGCGGg---CCGa-----------CGGGgGGCG--CUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 95307 | 0.66 | 0.412968 |
Target: 5'- uCCGcacccacUCGCCCGGCgGCCCCggaGCGcCc -3' miRNA: 3'- cGGC-------AGCGGGCCGaCGGGGgg-CGCuG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 114384 | 0.66 | 0.417039 |
Target: 5'- aGCCGgccUGcCCCGGCgaGCCCacccuagccggcccgCCCGgGGCa -3' miRNA: 3'- -CGGCa--GC-GGGCCGa-CGGG---------------GGGCgCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 85957 | 0.66 | 0.397726 |
Target: 5'- cGCCGUCGugaccaccgcccCCCGGCgcggacagcGCCCuCCCaCGAa -3' miRNA: 3'- -CGGCAGC------------GGGCCGa--------CGGG-GGGcGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 69135 | 0.66 | 0.405703 |
Target: 5'- cCCGUaGCagCUGGCcaUGCCCCagCGCGACa -3' miRNA: 3'- cGGCAgCG--GGCCG--ACGGGGg-GCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 63800 | 0.66 | 0.413781 |
Target: 5'- cGCCGggggggCGCUcuccuCGGCccuCCCgCCCGCGGCc -3' miRNA: 3'- -CGGCa-----GCGG-----GCCGac-GGG-GGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 84562 | 0.66 | 0.405703 |
Target: 5'- cGCUGUCGaggccgcgacCCgCGGCcagGCCgCCUGCGAUc -3' miRNA: 3'- -CGGCAGC----------GG-GCCGa--CGGgGGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 61137 | 0.66 | 0.421956 |
Target: 5'- gGCCGUcgagagcagCGUCCGcGCcagcGCCUCgCGCGGCa -3' miRNA: 3'- -CGGCA---------GCGGGC-CGa---CGGGGgGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 28442 | 0.66 | 0.413781 |
Target: 5'- gGCCGUCGCagcagCGGCcgggacGCCCgagaaCgGCGACg -3' miRNA: 3'- -CGGCAGCGg----GCCGa-----CGGGg----GgCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 44682 | 0.66 | 0.405703 |
Target: 5'- cGCCGUCGaCCgcuacugggCGGCgcgcgcggGCUUCCuCGCGGCc -3' miRNA: 3'- -CGGCAGC-GG---------GCCGa-------CGGGGG-GCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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