miRNA display CGI


Results 21 - 40 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 67137 0.66 0.425254
Target:  5'- cGCCGUguacgccuucucggGCCCGGaCgccccGCCCgCCgCGCGGCg -3'
miRNA:   3'- -CGGCAg-------------CGGGCC-Ga----CGGG-GG-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 105860 0.66 0.413781
Target:  5'- cGCCG-CGCCUGcaccaGC-GUCUCCCGCGGg -3'
miRNA:   3'- -CGGCaGCGGGC-----CGaCGGGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 106701 0.66 0.405703
Target:  5'- aGUCGgCGCucagcagcagCCGGUUGCCCagcgCCGCGAg -3'
miRNA:   3'- -CGGCaGCG----------GGCCGACGGGg---GGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 19365 0.66 0.397726
Target:  5'- gGCCGagGCCagggccgcgGGCgcgccGCCCUCCGCGcCg -3'
miRNA:   3'- -CGGCagCGGg--------CCGa----CGGGGGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 302 0.66 0.397726
Target:  5'- aGCCGcCGCCgCaGCcggGCCCgCUCGCGGg -3'
miRNA:   3'- -CGGCaGCGG-GcCGa--CGGG-GGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 16957 0.66 0.421956
Target:  5'- -gCGagGCCgGGCgGCCgCCCCgucuGCGGCg -3'
miRNA:   3'- cgGCagCGGgCCGaCGG-GGGG----CGCUG- -5'
23560 5' -66.9 NC_005261.1 + 137985 0.66 0.397726
Target:  5'- aGCCGcCGCCgCaGCcggGCCCgCUCGCGGg -3'
miRNA:   3'- -CGGCaGCGG-GcCGa--CGGG-GGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 123390 0.66 0.397726
Target:  5'- cGCCGcCGCCUGcuGCcgUGCUCCCgGCG-Ca -3'
miRNA:   3'- -CGGCaGCGGGC--CG--ACGGGGGgCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 89902 0.66 0.397726
Target:  5'- cGCCGcgcgCGCCCccgagcccgGGCccgacgcGCCCCCCGaGGCc -3'
miRNA:   3'- -CGGCa---GCGGG---------CCGa------CGGGGGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 8050 0.66 0.413781
Target:  5'- gGCCGUCagcuCCCuGCUGCCggCgCCGCuGACg -3'
miRNA:   3'- -CGGCAGc---GGGcCGACGG--GgGGCG-CUG- -5'
23560 5' -66.9 NC_005261.1 + 83724 0.66 0.388287
Target:  5'- cGCCGUCGCCggagGGCgccugcguuugcGCCUgCCGCccGACg -3'
miRNA:   3'- -CGGCAGCGGg---CCGa-----------CGGGgGGCG--CUG- -5'
23560 5' -66.9 NC_005261.1 + 95307 0.66 0.412968
Target:  5'- uCCGcacccacUCGCCCGGCgGCCCCggaGCGcCc -3'
miRNA:   3'- cGGC-------AGCGGGCCGaCGGGGgg-CGCuG- -5'
23560 5' -66.9 NC_005261.1 + 114384 0.66 0.417039
Target:  5'- aGCCGgccUGcCCCGGCgaGCCCacccuagccggcccgCCCGgGGCa -3'
miRNA:   3'- -CGGCa--GC-GGGCCGa-CGGG---------------GGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 85957 0.66 0.397726
Target:  5'- cGCCGUCGugaccaccgcccCCCGGCgcggacagcGCCCuCCCaCGAa -3'
miRNA:   3'- -CGGCAGC------------GGGCCGa--------CGGG-GGGcGCUg -5'
23560 5' -66.9 NC_005261.1 + 69135 0.66 0.405703
Target:  5'- cCCGUaGCagCUGGCcaUGCCCCagCGCGACa -3'
miRNA:   3'- cGGCAgCG--GGCCG--ACGGGGg-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 63800 0.66 0.413781
Target:  5'- cGCCGggggggCGCUcuccuCGGCccuCCCgCCCGCGGCc -3'
miRNA:   3'- -CGGCa-----GCGG-----GCCGac-GGG-GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 84562 0.66 0.405703
Target:  5'- cGCUGUCGaggccgcgacCCgCGGCcagGCCgCCUGCGAUc -3'
miRNA:   3'- -CGGCAGC----------GG-GCCGa--CGGgGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 61137 0.66 0.421956
Target:  5'- gGCCGUcgagagcagCGUCCGcGCcagcGCCUCgCGCGGCa -3'
miRNA:   3'- -CGGCA---------GCGGGC-CGa---CGGGGgGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 28442 0.66 0.413781
Target:  5'- gGCCGUCGCagcagCGGCcgggacGCCCgagaaCgGCGACg -3'
miRNA:   3'- -CGGCAGCGg----GCCGa-----CGGGg----GgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 44682 0.66 0.405703
Target:  5'- cGCCGUCGaCCgcuacugggCGGCgcgcgcggGCUUCCuCGCGGCc -3'
miRNA:   3'- -CGGCAGC-GG---------GCCGa-------CGGGGG-GCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.