Results 21 - 40 of 617 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 68536 | 0.77 | 0.075247 |
Target: 5'- cGCCGgCGCCCGcGC-GCCCCCUGCuGCg -3' miRNA: 3'- -CGGCaGCGGGC-CGaCGGGGGGCGcUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 31094 | 0.77 | 0.075247 |
Target: 5'- gGCCccauGcCGCCCGGCgGCCCCgCCGcCGACg -3' miRNA: 3'- -CGG----CaGCGGGCCGaCGGGG-GGC-GCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 35573 | 0.76 | 0.092706 |
Target: 5'- cGCCGcgcuauccuccaUCGCCCGGaccccagcgcccgGCCCCgCCGCGGCa -3' miRNA: 3'- -CGGC------------AGCGGGCCga-----------CGGGG-GGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 16400 | 0.76 | 0.084797 |
Target: 5'- cGUCGUCGCCgGGCggugcgggagagGCCCCCuCGaCGGCg -3' miRNA: 3'- -CGGCAGCGGgCCGa-----------CGGGGG-GC-GCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 64551 | 0.76 | 0.085219 |
Target: 5'- aGCCGUCuaaGCCCGcGCccGCCCUCCGCGuCg -3' miRNA: 3'- -CGGCAG---CGGGC-CGa-CGGGGGGCGCuG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 125676 | 0.76 | 0.08955 |
Target: 5'- -gCGUUGCCCGGCgcggGgCCCCCGCGuAUa -3' miRNA: 3'- cgGCAGCGGGCCGa---CgGGGGGCGC-UG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 50060 | 0.76 | 0.093396 |
Target: 5'- cGCCGgcgucgccccgGCCCGGCUgcgcggccggggcGCCCCCgCGCGGCg -3' miRNA: 3'- -CGGCag---------CGGGCCGA-------------CGGGGG-GCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 6133 | 0.75 | 0.111753 |
Target: 5'- aGCgCGUCGC--GGCcGCCCUCCGCGGCa -3' miRNA: 3'- -CG-GCAGCGggCCGaCGGGGGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 83041 | 0.75 | 0.101311 |
Target: 5'- gGCCGcUCGCCgCGGgagggggcuccCUGCgcgCCCCCGCGGCg -3' miRNA: 3'- -CGGC-AGCGG-GCC-----------GACG---GGGGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 128785 | 0.75 | 0.103832 |
Target: 5'- cGCCGUUGUCUGGgC-GCCCgggCCCGCGGCg -3' miRNA: 3'- -CGGCAGCGGGCC-GaCGGG---GGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 124559 | 0.75 | 0.106412 |
Target: 5'- cCCGcgCGCCCcGCgccCCCCCCGCGGCg -3' miRNA: 3'- cGGCa-GCGGGcCGac-GGGGGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 32633 | 0.75 | 0.106412 |
Target: 5'- aGCCGggcUCGCCCuggagcggGGCcaGCCCCCCGCGcCg -3' miRNA: 3'- -CGGC---AGCGGG--------CCGa-CGGGGGGCGCuG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 56170 | 0.75 | 0.103832 |
Target: 5'- cGCCGUCGaCCCGGCgacgUGgCCCgCGCuGACg -3' miRNA: 3'- -CGGCAGC-GGGCCG----ACgGGGgGCG-CUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 62766 | 0.75 | 0.106412 |
Target: 5'- cGCCGcCGCCCGGC-GCCuggaacuggCCCCGUGGg -3' miRNA: 3'- -CGGCaGCGGGCCGaCGG---------GGGGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 137150 | 0.75 | 0.106412 |
Target: 5'- aGCCGggcUCGCCCuggagcggGGCcaGCCCCCCGCGcCg -3' miRNA: 3'- -CGGC---AGCGGG--------CCGa-CGGGGGGCGCuG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 42458 | 0.75 | 0.110936 |
Target: 5'- cGCCGgCGCagcgcgcgaggcucCCGGC-GCCCCCgGCGGCg -3' miRNA: 3'- -CGGCaGCG--------------GGCCGaCGGGGGgCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 68464 | 0.75 | 0.114517 |
Target: 5'- gGCUcaGUC-CCCGGCgccGCCCCCCGCG-Cu -3' miRNA: 3'- -CGG--CAGcGGGCCGa--CGGGGGGCGCuG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 47354 | 0.75 | 0.114517 |
Target: 5'- uGCCGUCGCCCagcgcgcagacGGCgucguaggGCaUCCCCGCGAa -3' miRNA: 3'- -CGGCAGCGGG-----------CCGa-------CG-GGGGGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 23 | 0.75 | 0.111753 |
Target: 5'- aGCCGcCGUCCGccCUGCCCCCCGCc-- -3' miRNA: 3'- -CGGCaGCGGGCc-GACGGGGGGCGcug -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 137695 | 0.75 | 0.111753 |
Target: 5'- aGCCGcCGUCCGccCUGCCCCCCGCc-- -3' miRNA: 3'- -CGGCaGCGGGCc-GACGGGGGGCGcug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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