miRNA display CGI


Results 21 - 40 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 3235 0.67 0.352033
Target:  5'- cGCCG-CGCCaGGg-GCgCCCCgGCGGCc -3'
miRNA:   3'- -CGGCaGCGGgCCgaCG-GGGGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 3287 0.73 0.14241
Target:  5'- cGCCcUCGCCCaucGGCUcGUCCUCCGCGGu -3'
miRNA:   3'- -CGGcAGCGGG---CCGA-CGGGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 3344 0.72 0.17639
Target:  5'- cGCCGcggCGCCCGGCgcgccgGCCUUcagggCCGCGAg -3'
miRNA:   3'- -CGGCa--GCGGGCCGa-----CGGGG-----GGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 3506 0.69 0.260442
Target:  5'- cGCCGccaGCgCGGCcGCCUCCagCGCGGCg -3'
miRNA:   3'- -CGGCag-CGgGCCGaCGGGGG--GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 3742 0.67 0.34407
Target:  5'- cGCCGgcggCGCaCCGcGCcGCCucuagcgCCUCGCGGCa -3'
miRNA:   3'- -CGGCa---GCG-GGC-CGaCGG-------GGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 3859 0.86 0.017209
Target:  5'- cGCCGUCGCCagCGGCgccGCCCCCCGCGcgGCg -3'
miRNA:   3'- -CGGCAGCGG--GCCGa--CGGGGGGCGC--UG- -5'
23560 5' -66.9 NC_005261.1 + 4011 0.67 0.352033
Target:  5'- cGCCGaCGCugCCGGCcGCCgcgaCCCGCG-Cg -3'
miRNA:   3'- -CGGCaGCG--GGCCGaCGGg---GGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 4122 0.67 0.352033
Target:  5'- aGCUGUgGCCCcGGCaGCCCUgcaCGCGcCg -3'
miRNA:   3'- -CGGCAgCGGG-CCGaCGGGGg--GCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 4572 0.66 0.438595
Target:  5'- cGCgGgcggGUCCGGCggggcGCCCCCCgGCGcCa -3'
miRNA:   3'- -CGgCag--CGGGCCGa----CGGGGGG-CGCuG- -5'
23560 5' -66.9 NC_005261.1 + 4847 0.67 0.357168
Target:  5'- gGCCGcgCGCCCgugggccgcgcgcaGGCagccgaaGCCCUgCGCGGCa -3'
miRNA:   3'- -CGGCa-GCGGG--------------CCGa------CGGGGgGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 4891 0.73 0.149045
Target:  5'- aGCCGcggcCGCCucggcuucggcggCGGCUGCCuCCgCCGCGGCc -3'
miRNA:   3'- -CGGCa---GCGG-------------GCCGACGG-GG-GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 4948 0.72 0.160476
Target:  5'- cGCCG-CgGCCCaGGC-GCCCCcggCCGCGGCg -3'
miRNA:   3'- -CGGCaG-CGGG-CCGaCGGGG---GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 4998 0.66 0.405703
Target:  5'- cGCCGagGCCCccggGCCCCCCGgGu- -3'
miRNA:   3'- -CGGCagCGGGccgaCGGGGGGCgCug -5'
23560 5' -66.9 NC_005261.1 + 5057 0.69 0.254702
Target:  5'- cGUCGUCgGCCCcGCcgGCcucgucacucuCCCCCGCGGCc -3'
miRNA:   3'- -CGGCAG-CGGGcCGa-CG-----------GGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 5324 0.82 0.031044
Target:  5'- aGCCGcCGCUCGGC-GCCgCCCGCGGCg -3'
miRNA:   3'- -CGGCaGCGGGCCGaCGGgGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 5599 0.71 0.189233
Target:  5'- cGCCG-CGCCCgcguccucGGCgccagcGCCCCCUgGCGGCu -3'
miRNA:   3'- -CGGCaGCGGG--------CCGa-----CGGGGGG-CGCUG- -5'
23560 5' -66.9 NC_005261.1 + 5863 0.66 0.405703
Target:  5'- cGCCGcgaGCgCGGCgaGCgCgCCGCGGCg -3'
miRNA:   3'- -CGGCag-CGgGCCGa-CGgGgGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 5985 0.67 0.344788
Target:  5'- uGCCGcgCGUCuCcGCU-CCUCCCGCGGCg -3'
miRNA:   3'- -CGGCa-GCGG-GcCGAcGGGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 6059 0.71 0.189233
Target:  5'- gGCCccCGCCCGcGCUGCCUgCaGCGGCg -3'
miRNA:   3'- -CGGcaGCGGGC-CGACGGGgGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 6133 0.75 0.111753
Target:  5'- aGCgCGUCGC--GGCcGCCCUCCGCGGCa -3'
miRNA:   3'- -CG-GCAGCGggCCGaCGGGGGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.