miRNA display CGI


Results 1 - 20 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 23 0.75 0.111753
Target:  5'- aGCCGcCGUCCGccCUGCCCCCCGCc-- -3'
miRNA:   3'- -CGGCaGCGGGCc-GACGGGGGGCGcug -5'
23560 5' -66.9 NC_005261.1 + 113 0.68 0.310187
Target:  5'- cGCCGccCGCgCCGGCgccGCCCCUggugcuCGCGGg -3'
miRNA:   3'- -CGGCa-GCG-GGCCGa--CGGGGG------GCGCUg -5'
23560 5' -66.9 NC_005261.1 + 212 0.68 0.303592
Target:  5'- cGCCGcCGCCCcuGgUGCUcgcgggCCCCGCGAg -3'
miRNA:   3'- -CGGCaGCGGGc-CgACGG------GGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 216 0.69 0.266286
Target:  5'- gGCCG-CGCCgGGCUGCgggCCgCCGCaGCc -3'
miRNA:   3'- -CGGCaGCGGgCCGACG---GGgGGCGcUG- -5'
23560 5' -66.9 NC_005261.1 + 302 0.66 0.397726
Target:  5'- aGCCGcCGCCgCaGCcggGCCCgCUCGCGGg -3'
miRNA:   3'- -CGGCaGCGG-GcCGa--CGGG-GGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 654 0.72 0.17639
Target:  5'- cGCCG-CGucCCCGGCgccgaguccugGCCCUCCGCgGACg -3'
miRNA:   3'- -CGGCaGC--GGGCCGa----------CGGGGGGCG-CUG- -5'
23560 5' -66.9 NC_005261.1 + 1193 0.7 0.238106
Target:  5'- gGCCGggGCCgGGCgcggcgcgGaCCCCCCGcCGAUg -3'
miRNA:   3'- -CGGCagCGGgCCGa-------C-GGGGGGC-GCUG- -5'
23560 5' -66.9 NC_005261.1 + 1304 0.69 0.254702
Target:  5'- cCCGUCGCCggCGGCggcacGCgCUCCGgGACg -3'
miRNA:   3'- cGGCAGCGG--GCCGa----CGgGGGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 1343 0.66 0.413781
Target:  5'- cGCCG-CGCCUGcaccaGC-GUCUCCCGCGGg -3'
miRNA:   3'- -CGGCaGCGGGC-----CGaCGGGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 1644 0.67 0.365343
Target:  5'- cGCUG-CGCCgGGCgucucugcgcccGCCCaCCCGCGcCu -3'
miRNA:   3'- -CGGCaGCGGgCCGa-----------CGGG-GGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 1758 0.71 0.211004
Target:  5'- cGCUGcUGCCCgcgcgcgagucuggGGCUGCCgcgugcCCCUGCGACg -3'
miRNA:   3'- -CGGCaGCGGG--------------CCGACGG------GGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 2183 0.66 0.405703
Target:  5'- aGUCGgCGCucagcagcagCCGGUUGCCCagcgCCGCGAg -3'
miRNA:   3'- -CGGCaGCG----------GGCCGACGGGg---GGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 2237 0.67 0.382077
Target:  5'- cGCCG-CGCaCCGGCgGCCaCUcaggCCGcCGGCg -3'
miRNA:   3'- -CGGCaGCG-GGCCGaCGG-GG----GGC-GCUG- -5'
23560 5' -66.9 NC_005261.1 + 2393 0.69 0.260442
Target:  5'- cGCUGgcggcgagcgCGCCC-GCggGCCCCgCGCGGCg -3'
miRNA:   3'- -CGGCa---------GCGGGcCGa-CGGGGgGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 2549 0.66 0.438595
Target:  5'- aGCCGcCGCgCGGCgcagaGCUCCUCgaGCGAg -3'
miRNA:   3'- -CGGCaGCGgGCCGa----CGGGGGG--CGCUg -5'
23560 5' -66.9 NC_005261.1 + 2706 0.69 0.290727
Target:  5'- gGCCGgCGCCgGGCcccUGgCCCCgGcCGACu -3'
miRNA:   3'- -CGGCaGCGGgCCG---ACgGGGGgC-GCUG- -5'
23560 5' -66.9 NC_005261.1 + 2756 0.71 0.191006
Target:  5'- gGCCGUCgcggcgggccucgagGCCCgcccccgaggGGCUGCCgCCgGCGGCc -3'
miRNA:   3'- -CGGCAG---------------CGGG----------CCGACGGgGGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 2995 0.67 0.374407
Target:  5'- gGCCuggCgGCCCGGCgccggGgCUCCCGCGGg -3'
miRNA:   3'- -CGGca-G-CGGGCCGa----CgGGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 3021 0.69 0.272237
Target:  5'- gGCCGUggcccucugcgcCGCCuCGGCcaUGCUCCgCGCGAg -3'
miRNA:   3'- -CGGCA------------GCGG-GCCG--ACGGGGgGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 3187 0.66 0.397726
Target:  5'- cGCUGcCGCCgcaGGCgucgGCCUCgccgCCGCGGCc -3'
miRNA:   3'- -CGGCaGCGGg--CCGa---CGGGG----GGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.