Results 1 - 20 of 617 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 124559 | 0.75 | 0.106412 |
Target: 5'- cCCGcgCGCCCcGCgccCCCCCCGCGGCg -3' miRNA: 3'- cGGCa-GCGGGcCGac-GGGGGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 135612 | 0.77 | 0.075247 |
Target: 5'- gGCCccauGcCGCCCGGCgGCCCCgCCGcCGACg -3' miRNA: 3'- -CGG----CaGCGGGCCGaCGGGG-GGC-GCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 64551 | 0.76 | 0.085219 |
Target: 5'- aGCCGUCuaaGCCCGcGCccGCCCUCCGCGuCg -3' miRNA: 3'- -CGGCAG---CGGGC-CGa-CGGGGGGCGCuG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 125676 | 0.76 | 0.08955 |
Target: 5'- -gCGUUGCCCGGCgcggGgCCCCCGCGuAUa -3' miRNA: 3'- cgGCAGCGGGCCGa---CgGGGGGCGC-UG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 50060 | 0.76 | 0.093396 |
Target: 5'- cGCCGgcgucgccccgGCCCGGCUgcgcggccggggcGCCCCCgCGCGGCg -3' miRNA: 3'- -CGGCag---------CGGGCCGA-------------CGGGGG-GCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 56170 | 0.75 | 0.103832 |
Target: 5'- cGCCGUCGaCCCGGCgacgUGgCCCgCGCuGACg -3' miRNA: 3'- -CGGCAGC-GGGCCG----ACgGGGgGCG-CUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 73694 | 0.75 | 0.103832 |
Target: 5'- gGUCGUgGuCCCGGacCUGCCCCCCGaCGAg -3' miRNA: 3'- -CGGCAgC-GGGCC--GACGGGGGGC-GCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 94930 | 0.75 | 0.106412 |
Target: 5'- gGCCGg-GCugCCGGC-GCCCCCCGCGGg -3' miRNA: 3'- -CGGCagCG--GGCCGaCGGGGGGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 62766 | 0.75 | 0.106412 |
Target: 5'- cGCCGcCGCCCGGC-GCCuggaacuggCCCCGUGGg -3' miRNA: 3'- -CGGCaGCGGGCCGaCGG---------GGGGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 98438 | 0.77 | 0.073392 |
Target: 5'- cGCCGgCGgCCGcGCcGCCCCCCgGCGACg -3' miRNA: 3'- -CGGCaGCgGGC-CGaCGGGGGG-CGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 91728 | 0.77 | 0.073392 |
Target: 5'- uGCgCGaCGCCgGGCUGCgCCCCGCGGa -3' miRNA: 3'- -CG-GCaGCGGgCCGACGgGGGGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 115542 | 0.78 | 0.069812 |
Target: 5'- cUCGUCGCCgGGCccGUCCCCCgGCGGCa -3' miRNA: 3'- cGGCAGCGGgCCGa-CGGGGGG-CGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 3859 | 0.86 | 0.017209 |
Target: 5'- cGCCGUCGCCagCGGCgccGCCCCCCGCGcgGCg -3' miRNA: 3'- -CGGCAGCGG--GCCGa--CGGGGGGCGC--UG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 137041 | 0.84 | 0.022831 |
Target: 5'- cGCCG-CGCCCGGCcccgGCCCCggCCGCGGCg -3' miRNA: 3'- -CGGCaGCGGGCCGa---CGGGG--GGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 103292 | 0.82 | 0.03026 |
Target: 5'- gGCCcggGUCGCgCCGGCcGCCCCCCGCGuGCg -3' miRNA: 3'- -CGG---CAGCG-GGCCGaCGGGGGGCGC-UG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 5324 | 0.82 | 0.031044 |
Target: 5'- aGCCGcCGCUCGGC-GCCgCCCGCGGCg -3' miRNA: 3'- -CGGCaGCGGGCCGaCGGgGGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 91947 | 0.8 | 0.049073 |
Target: 5'- cGCCGUUGCCCGGCcagaGCgCCCCgGgGACa -3' miRNA: 3'- -CGGCAGCGGGCCGa---CG-GGGGgCgCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 22815 | 0.79 | 0.051619 |
Target: 5'- gGCCG-CGgcCCCGGCUGCCgCCCGCGGu -3' miRNA: 3'- -CGGCaGC--GGGCCGACGGgGGGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 78760 | 0.78 | 0.061582 |
Target: 5'- gGCCG-CGCCgGcGCUGCCCCCCgacgccGCGGCc -3' miRNA: 3'- -CGGCaGCGGgC-CGACGGGGGG------CGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 56847 | 0.78 | 0.068085 |
Target: 5'- gGCCGggaGCCCGGC-GCCCCCaGCGAg -3' miRNA: 3'- -CGGCag-CGGGCCGaCGGGGGgCGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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