miRNA display CGI


Results 1 - 20 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 124559 0.75 0.106412
Target:  5'- cCCGcgCGCCCcGCgccCCCCCCGCGGCg -3'
miRNA:   3'- cGGCa-GCGGGcCGac-GGGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 135612 0.77 0.075247
Target:  5'- gGCCccauGcCGCCCGGCgGCCCCgCCGcCGACg -3'
miRNA:   3'- -CGG----CaGCGGGCCGaCGGGG-GGC-GCUG- -5'
23560 5' -66.9 NC_005261.1 + 64551 0.76 0.085219
Target:  5'- aGCCGUCuaaGCCCGcGCccGCCCUCCGCGuCg -3'
miRNA:   3'- -CGGCAG---CGGGC-CGa-CGGGGGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 125676 0.76 0.08955
Target:  5'- -gCGUUGCCCGGCgcggGgCCCCCGCGuAUa -3'
miRNA:   3'- cgGCAGCGGGCCGa---CgGGGGGCGC-UG- -5'
23560 5' -66.9 NC_005261.1 + 50060 0.76 0.093396
Target:  5'- cGCCGgcgucgccccgGCCCGGCUgcgcggccggggcGCCCCCgCGCGGCg -3'
miRNA:   3'- -CGGCag---------CGGGCCGA-------------CGGGGG-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 56170 0.75 0.103832
Target:  5'- cGCCGUCGaCCCGGCgacgUGgCCCgCGCuGACg -3'
miRNA:   3'- -CGGCAGC-GGGCCG----ACgGGGgGCG-CUG- -5'
23560 5' -66.9 NC_005261.1 + 73694 0.75 0.103832
Target:  5'- gGUCGUgGuCCCGGacCUGCCCCCCGaCGAg -3'
miRNA:   3'- -CGGCAgC-GGGCC--GACGGGGGGC-GCUg -5'
23560 5' -66.9 NC_005261.1 + 94930 0.75 0.106412
Target:  5'- gGCCGg-GCugCCGGC-GCCCCCCGCGGg -3'
miRNA:   3'- -CGGCagCG--GGCCGaCGGGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 62766 0.75 0.106412
Target:  5'- cGCCGcCGCCCGGC-GCCuggaacuggCCCCGUGGg -3'
miRNA:   3'- -CGGCaGCGGGCCGaCGG---------GGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 98438 0.77 0.073392
Target:  5'- cGCCGgCGgCCGcGCcGCCCCCCgGCGACg -3'
miRNA:   3'- -CGGCaGCgGGC-CGaCGGGGGG-CGCUG- -5'
23560 5' -66.9 NC_005261.1 + 91728 0.77 0.073392
Target:  5'- uGCgCGaCGCCgGGCUGCgCCCCGCGGa -3'
miRNA:   3'- -CG-GCaGCGGgCCGACGgGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 115542 0.78 0.069812
Target:  5'- cUCGUCGCCgGGCccGUCCCCCgGCGGCa -3'
miRNA:   3'- cGGCAGCGGgCCGa-CGGGGGG-CGCUG- -5'
23560 5' -66.9 NC_005261.1 + 3859 0.86 0.017209
Target:  5'- cGCCGUCGCCagCGGCgccGCCCCCCGCGcgGCg -3'
miRNA:   3'- -CGGCAGCGG--GCCGa--CGGGGGGCGC--UG- -5'
23560 5' -66.9 NC_005261.1 + 137041 0.84 0.022831
Target:  5'- cGCCG-CGCCCGGCcccgGCCCCggCCGCGGCg -3'
miRNA:   3'- -CGGCaGCGGGCCGa---CGGGG--GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 103292 0.82 0.03026
Target:  5'- gGCCcggGUCGCgCCGGCcGCCCCCCGCGuGCg -3'
miRNA:   3'- -CGG---CAGCG-GGCCGaCGGGGGGCGC-UG- -5'
23560 5' -66.9 NC_005261.1 + 5324 0.82 0.031044
Target:  5'- aGCCGcCGCUCGGC-GCCgCCCGCGGCg -3'
miRNA:   3'- -CGGCaGCGGGCCGaCGGgGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 91947 0.8 0.049073
Target:  5'- cGCCGUUGCCCGGCcagaGCgCCCCgGgGACa -3'
miRNA:   3'- -CGGCAGCGGGCCGa---CG-GGGGgCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 22815 0.79 0.051619
Target:  5'- gGCCG-CGgcCCCGGCUGCCgCCCGCGGu -3'
miRNA:   3'- -CGGCaGC--GGGCCGACGGgGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 78760 0.78 0.061582
Target:  5'- gGCCG-CGCCgGcGCUGCCCCCCgacgccGCGGCc -3'
miRNA:   3'- -CGGCaGCGGgC-CGACGGGGGG------CGCUG- -5'
23560 5' -66.9 NC_005261.1 + 56847 0.78 0.068085
Target:  5'- gGCCGggaGCCCGGC-GCCCCCaGCGAg -3'
miRNA:   3'- -CGGCag-CGGGCCGaCGGGGGgCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.