miRNA display CGI


Results 1 - 20 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 75933 0.66 0.397726
Target:  5'- cGCCGcgCGCCCGcGCgGCgCCgaCGUGAUg -3'
miRNA:   3'- -CGGCa-GCGGGC-CGaCGgGGg-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 66264 0.66 0.38985
Target:  5'- uGCCGcgCGCUCcGC-GCCCCgCGcCGACg -3'
miRNA:   3'- -CGGCa-GCGGGcCGaCGGGGgGC-GCUG- -5'
23560 5' -66.9 NC_005261.1 + 302 0.66 0.397726
Target:  5'- aGCCGcCGCCgCaGCcggGCCCgCUCGCGGg -3'
miRNA:   3'- -CGGCaGCGG-GcCGa--CGGG-GGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 123390 0.66 0.397726
Target:  5'- cGCCGcCGCCUGcuGCcgUGCUCCCgGCG-Ca -3'
miRNA:   3'- -CGGCaGCGGGC--CG--ACGGGGGgCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 85957 0.66 0.397726
Target:  5'- cGCCGUCGugaccaccgcccCCCGGCgcggacagcGCCCuCCCaCGAa -3'
miRNA:   3'- -CGGCAGC------------GGGCCGa--------CGGG-GGGcGCUg -5'
23560 5' -66.9 NC_005261.1 + 19365 0.66 0.397726
Target:  5'- gGCCGagGCCagggccgcgGGCgcgccGCCCUCCGCGcCg -3'
miRNA:   3'- -CGGCagCGGg--------CCGa----CGGGGGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 135552 0.66 0.392988
Target:  5'- aGCCGgcgCGCCgccggguccccagcgCGGCgggagccgccgcUGCCCgCCCGCGuGCu -3'
miRNA:   3'- -CGGCa--GCGG---------------GCCG------------ACGGG-GGGCGC-UG- -5'
23560 5' -66.9 NC_005261.1 + 64168 0.66 0.405703
Target:  5'- gGCCGcgUCGCgCaGCUGCCgcagCCCCcCGGCg -3'
miRNA:   3'- -CGGC--AGCGgGcCGACGG----GGGGcGCUG- -5'
23560 5' -66.9 NC_005261.1 + 84562 0.66 0.405703
Target:  5'- cGCUGUCGaggccgcgacCCgCGGCcagGCCgCCUGCGAUc -3'
miRNA:   3'- -CGGCAGC----------GG-GCCGa--CGGgGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 3187 0.66 0.397726
Target:  5'- cGCUGcCGCCgcaGGCgucgGCCUCgccgCCGCGGCc -3'
miRNA:   3'- -CGGCaGCGGg--CCGa---CGGGG----GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 50289 0.66 0.397726
Target:  5'- gGCCGUggcggCGCgCGGCUccagGCCCCgggUgGCGGCa -3'
miRNA:   3'- -CGGCA-----GCGgGCCGA----CGGGG---GgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 110967 0.66 0.397726
Target:  5'- gGCCG--GCCgGGCUGCCcgcacaCCCCGCc-- -3'
miRNA:   3'- -CGGCagCGGgCCGACGG------GGGGCGcug -5'
23560 5' -66.9 NC_005261.1 + 32980 0.66 0.38985
Target:  5'- aGCCuGUCGCgCGGaUGCCgCCgcagaucacggCCGCGGCc -3'
miRNA:   3'- -CGG-CAGCGgGCCgACGG-GG-----------GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 137985 0.66 0.397726
Target:  5'- aGCCGcCGCCgCaGCcggGCCCgCUCGCGGg -3'
miRNA:   3'- -CGGCaGCGG-GcCGa--CGGG-GGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 89902 0.66 0.397726
Target:  5'- cGCCGcgcgCGCCCccgagcccgGGCccgacgcGCCCCCCGaGGCc -3'
miRNA:   3'- -CGGCa---GCGGG---------CCGa------CGGGGGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 106701 0.66 0.405703
Target:  5'- aGUCGgCGCucagcagcagCCGGUUGCCCagcgCCGCGAg -3'
miRNA:   3'- -CGGCaGCG----------GGCCGACGGGg---GGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 63934 0.66 0.396143
Target:  5'- -gCGUCugcuGCCCGGCggcgaccgccccGCCCgCCGCgGACg -3'
miRNA:   3'- cgGCAG----CGGGCCGa-----------CGGGgGGCG-CUG- -5'
23560 5' -66.9 NC_005261.1 + 69135 0.66 0.405703
Target:  5'- cCCGUaGCagCUGGCcaUGCCCCagCGCGACa -3'
miRNA:   3'- cGGCAgCG--GGCCG--ACGGGGg-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 83724 0.66 0.388287
Target:  5'- cGCCGUCGCCggagGGCgccugcguuugcGCCUgCCGCccGACg -3'
miRNA:   3'- -CGGCAGCGGg---CCGa-----------CGGGgGGCG--CUG- -5'
23560 5' -66.9 NC_005261.1 + 38036 0.66 0.38985
Target:  5'- uGCUGgcCGCCaC-GCUGCCCCgCCGCcACg -3'
miRNA:   3'- -CGGCa-GCGG-GcCGACGGGG-GGCGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.