miRNA display CGI


Results 1 - 20 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 131823 0.66 0.438595
Target:  5'- cGCCGcCGCUugacgCGGC-GCCCgCCUGCuGCg -3'
miRNA:   3'- -CGGCaGCGG-----GCCGaCGGG-GGGCGcUG- -5'
23560 5' -66.9 NC_005261.1 + 45415 0.66 0.430228
Target:  5'- uGCUGcggCGCCUGcGCccGCCgCCCGCGcGCa -3'
miRNA:   3'- -CGGCa--GCGGGC-CGa-CGGgGGGCGC-UG- -5'
23560 5' -66.9 NC_005261.1 + 42561 0.66 0.430228
Target:  5'- uGCUcUUGCCCGaGCccgcGUUCCCCGUGAUa -3'
miRNA:   3'- -CGGcAGCGGGC-CGa---CGGGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 131564 1.1 0.000246
Target:  5'- cGCCGUCGCCCGGCUGCCCCCCGCGACg -3'
miRNA:   3'- -CGGCAGCGGGCCGACGGGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 73344 0.66 0.438595
Target:  5'- cGUCGUcucCGCCCGGCgccgGCUCag-GCGGCg -3'
miRNA:   3'- -CGGCA---GCGGGCCGa---CGGGgggCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 55984 0.66 0.438595
Target:  5'- cGCCGUCGCCauCGGCaa----CCGCGGCg -3'
miRNA:   3'- -CGGCAGCGG--GCCGacggggGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 87945 0.66 0.438595
Target:  5'- aGCCG-CGCgCCGcCacgGCCCgCCgGCGGCg -3'
miRNA:   3'- -CGGCaGCG-GGCcGa--CGGG-GGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 68367 0.66 0.438595
Target:  5'- -gUGUCGCUCGGC-GUCgCCUCGgGGCu -3'
miRNA:   3'- cgGCAGCGGGCCGaCGG-GGGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 4572 0.66 0.438595
Target:  5'- cGCgGgcggGUCCGGCggggcGCCCCCCgGCGcCa -3'
miRNA:   3'- -CGgCag--CGGGCCGa----CGGGGGG-CGCuG- -5'
23560 5' -66.9 NC_005261.1 + 57425 0.66 0.430228
Target:  5'- cGCCGcgaGCCCaGGaUGCgCaCCCgCGCGACg -3'
miRNA:   3'- -CGGCag-CGGG-CCgACG-G-GGG-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 57261 0.66 0.437754
Target:  5'- cGCCGcacacgcuccgcaUCGCgCGGCaGCUgCUCGCGAg -3'
miRNA:   3'- -CGGC-------------AGCGgGCCGaCGGgGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 17313 0.66 0.438595
Target:  5'- gGCCGgggucgCgGCCCGGCccgGCCcagcucccgCCCCGCccgGGCa -3'
miRNA:   3'- -CGGCa-----G-CGGGCCGa--CGG---------GGGGCG---CUG- -5'
23560 5' -66.9 NC_005261.1 + 95759 0.66 0.438595
Target:  5'- cGCCGgggGCgCCGGgaGCCUCgCGCGcuGCg -3'
miRNA:   3'- -CGGCag-CG-GGCCgaCGGGGgGCGC--UG- -5'
23560 5' -66.9 NC_005261.1 + 11199 0.66 0.437754
Target:  5'- cGuuGUUGUuuuuaaauaaacgCCGcGUgGCCCCCCGCGGg -3'
miRNA:   3'- -CggCAGCG-------------GGC-CGaCGGGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 95380 0.66 0.438595
Target:  5'- cGCgGcCcCCCGGCgcGCCgCUCGCGGCc -3'
miRNA:   3'- -CGgCaGcGGGCCGa-CGGgGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 50805 0.66 0.438595
Target:  5'- cGCCGcCGCCauGacggGCUCCgCGCGGCu -3'
miRNA:   3'- -CGGCaGCGGgcCga--CGGGGgGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 133104 0.66 0.430228
Target:  5'- cGCCGUCaaCCGcGCgGCCUUCCaCGGCg -3'
miRNA:   3'- -CGGCAGcgGGC-CGaCGGGGGGcGCUG- -5'
23560 5' -66.9 NC_005261.1 + 36568 0.66 0.430228
Target:  5'- aGCCGa-GCUgagCGGggGCCCgCCGCGGCc -3'
miRNA:   3'- -CGGCagCGG---GCCgaCGGGgGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 77061 0.66 0.438595
Target:  5'- nCCG-CGCCUGGCcgGUgCCgCGCGAg -3'
miRNA:   3'- cGGCaGCGGGCCGa-CGgGGgGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 133795 0.66 0.438595
Target:  5'- cGCauccCGCCCgGGCUGCUCgaCgGCGACg -3'
miRNA:   3'- -CGgca-GCGGG-CCGACGGGg-GgCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.