miRNA display CGI


Results 21 - 40 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 131823 0.66 0.438595
Target:  5'- cGCCGcCGCUugacgCGGC-GCCCgCCUGCuGCg -3'
miRNA:   3'- -CGGCaGCGG-----GCCGaCGGG-GGGCGcUG- -5'
23560 5' -66.9 NC_005261.1 + 55416 0.66 0.421956
Target:  5'- -aCGcgCGCgCCGGCUGgCgCCaCCGCGAg -3'
miRNA:   3'- cgGCa-GCG-GGCCGACgG-GG-GGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 80039 0.66 0.421956
Target:  5'- cGCCGUCGCCgCcGUcGCCaCUgGCGGCg -3'
miRNA:   3'- -CGGCAGCGG-GcCGaCGGgGGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 90403 0.66 0.430228
Target:  5'- gGCUGgCGCCCGGC-GCggaCUaCGCGACg -3'
miRNA:   3'- -CGGCaGCGGGCCGaCGg--GGgGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 12798 0.66 0.438595
Target:  5'- aGCuCGUCGUCgGcgucGCUGCcguCCUCCGCGAa -3'
miRNA:   3'- -CG-GCAGCGGgC----CGACG---GGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 101511 0.66 0.413781
Target:  5'- gGCCa--GCCCGGC-GCCCUcgUCGCGGu -3'
miRNA:   3'- -CGGcagCGGGCCGaCGGGG--GGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 35969 0.66 0.421956
Target:  5'- gGCCGcUCgGCCgcuguagcggCGGCgGCUCCUgGCGGCg -3'
miRNA:   3'- -CGGC-AG-CGG----------GCCGaCGGGGGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 68367 0.66 0.438595
Target:  5'- -gUGUCGCUCGGC-GUCgCCUCGgGGCu -3'
miRNA:   3'- cgGCAGCGGGCCGaCGG-GGGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 76019 0.66 0.421956
Target:  5'- cGCCGcgcagCGCCgCgGGC-GCCCCgCGCGcCa -3'
miRNA:   3'- -CGGCa----GCGG-G-CCGaCGGGGgGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 87570 0.66 0.430228
Target:  5'- gGCCGUCaGCCCcgcgccgcccaGGCcgguggucuuggUGCCggcgaCCaCCGCGACg -3'
miRNA:   3'- -CGGCAG-CGGG-----------CCG------------ACGG-----GG-GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 133795 0.66 0.438595
Target:  5'- cGCauccCGCCCgGGCUGCUCgaCgGCGACg -3'
miRNA:   3'- -CGgca-GCGGG-CCGACGGGg-GgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 55984 0.66 0.438595
Target:  5'- cGCCGUCGCCauCGGCaa----CCGCGGCg -3'
miRNA:   3'- -CGGCAGCGG--GCCGacggggGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 103388 0.66 0.413781
Target:  5'- cGCCG-CGCCgCGGCcGCCugcgccuccagCUCCGCG-Cg -3'
miRNA:   3'- -CGGCaGCGG-GCCGaCGG-----------GGGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 102423 0.66 0.413781
Target:  5'- uGCCGcUGCgCGGCcGCCUCCU-CGGCg -3'
miRNA:   3'- -CGGCaGCGgGCCGaCGGGGGGcGCUG- -5'
23560 5' -66.9 NC_005261.1 + 86962 0.66 0.421956
Target:  5'- aCCGUgaagcacaCGUCCGGCggcagcacgGCgCCCUCGUGGCc -3'
miRNA:   3'- cGGCA--------GCGGGCCGa--------CG-GGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 133104 0.66 0.430228
Target:  5'- cGCCGUCaaCCGcGCgGCCUUCCaCGGCg -3'
miRNA:   3'- -CGGCAGcgGGC-CGaCGGGGGGcGCUG- -5'
23560 5' -66.9 NC_005261.1 + 57261 0.66 0.437754
Target:  5'- cGCCGcacacgcuccgcaUCGCgCGGCaGCUgCUCGCGAg -3'
miRNA:   3'- -CGGC-------------AGCGgGCCGaCGGgGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 73344 0.66 0.438595
Target:  5'- cGUCGUcucCGCCCGGCgccgGCUCag-GCGGCg -3'
miRNA:   3'- -CGGCA---GCGGGCCGa---CGGGgggCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 87354 0.66 0.430228
Target:  5'- gGCCGUCuCggGGCUagcGCCCaCCgCGCGGCa -3'
miRNA:   3'- -CGGCAGcGggCCGA---CGGG-GG-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 13788 0.66 0.421956
Target:  5'- cGCCc-UGCCCGGCgggGUCCCaaGCGuCg -3'
miRNA:   3'- -CGGcaGCGGGCCGa--CGGGGggCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.