Results 21 - 40 of 617 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 87570 | 0.66 | 0.430228 |
Target: 5'- gGCCGUCaGCCCcgcgccgcccaGGCcgguggucuuggUGCCggcgaCCaCCGCGACg -3' miRNA: 3'- -CGGCAG-CGGG-----------CCG------------ACGG-----GG-GGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 42561 | 0.66 | 0.430228 |
Target: 5'- uGCUcUUGCCCGaGCccgcGUUCCCCGUGAUa -3' miRNA: 3'- -CGGcAGCGGGC-CGa---CGGGGGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 17313 | 0.66 | 0.438595 |
Target: 5'- gGCCGgggucgCgGCCCGGCccgGCCcagcucccgCCCCGCccgGGCa -3' miRNA: 3'- -CGGCa-----G-CGGGCCGa--CGG---------GGGGCG---CUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 77061 | 0.66 | 0.438595 |
Target: 5'- nCCG-CGCCUGGCcgGUgCCgCGCGAg -3' miRNA: 3'- cGGCaGCGGGCCGa-CGgGGgGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 20039 | 0.66 | 0.418675 |
Target: 5'- gGCCGguucCGUCCGGCggugugaccuccaGCCCCUuguCGCuGACg -3' miRNA: 3'- -CGGCa---GCGGGCCGa------------CGGGGG---GCG-CUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 117575 | 0.66 | 0.421956 |
Target: 5'- uGCCGccccgCGCCCGccGCUGUCgaUCCUGcCGACg -3' miRNA: 3'- -CGGCa----GCGGGC--CGACGG--GGGGC-GCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 45415 | 0.66 | 0.430228 |
Target: 5'- uGCUGcggCGCCUGcGCccGCCgCCCGCGcGCa -3' miRNA: 3'- -CGGCa--GCGGGC-CGa-CGGgGGGCGC-UG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 95380 | 0.66 | 0.438595 |
Target: 5'- cGCgGcCcCCCGGCgcGCCgCUCGCGGCc -3' miRNA: 3'- -CGgCaGcGGGCCGa-CGGgGGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 135044 | 0.66 | 0.421956 |
Target: 5'- gGCCGaCGCCugCGGCggcagcgGCCCgCCGCuuuccGGCg -3' miRNA: 3'- -CGGCaGCGG--GCCGa------CGGGgGGCG-----CUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 95759 | 0.66 | 0.438595 |
Target: 5'- cGCCGgggGCgCCGGgaGCCUCgCGCGcuGCg -3' miRNA: 3'- -CGGCag-CG-GGCCgaCGGGGgGCGC--UG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 36568 | 0.66 | 0.430228 |
Target: 5'- aGCCGa-GCUgagCGGggGCCCgCCGCGGCc -3' miRNA: 3'- -CGGCagCGG---GCCgaCGGGgGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 105186 | 0.66 | 0.421956 |
Target: 5'- cGCCGcCGCCgCGGCagGCUcguccgcuuUCCCGCcGCg -3' miRNA: 3'- -CGGCaGCGG-GCCGa-CGG---------GGGGCGcUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 11199 | 0.66 | 0.437754 |
Target: 5'- cGuuGUUGUuuuuaaauaaacgCCGcGUgGCCCCCCGCGGg -3' miRNA: 3'- -CggCAGCG-------------GGC-CGaCGGGGGGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 4572 | 0.66 | 0.438595 |
Target: 5'- cGCgGgcggGUCCGGCggggcGCCCCCCgGCGcCa -3' miRNA: 3'- -CGgCag--CGGGCCGa----CGGGGGG-CGCuG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 87945 | 0.66 | 0.438595 |
Target: 5'- aGCCG-CGCgCCGcCacgGCCCgCCgGCGGCg -3' miRNA: 3'- -CGGCaGCG-GGCcGa--CGGG-GGgCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 73344 | 0.66 | 0.438595 |
Target: 5'- cGUCGUcucCGCCCGGCgccgGCUCag-GCGGCg -3' miRNA: 3'- -CGGCA---GCGGGCCGa---CGGGgggCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 91462 | 0.66 | 0.413781 |
Target: 5'- gGCCc-CGCCC-GC-GCCUCCCaGCGGCg -3' miRNA: 3'- -CGGcaGCGGGcCGaCGGGGGG-CGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 9867 | 0.66 | 0.417039 |
Target: 5'- aGCCGgccUGcCCCGGCgaGCCCacccuagccggcccgCCCGgGGCa -3' miRNA: 3'- -CGGCa--GC-GGGCCGa-CGGG---------------GGGCgCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 108887 | 0.66 | 0.421956 |
Target: 5'- -aCGaCGgCCGcGCUGCCCgCCgGCGAg -3' miRNA: 3'- cgGCaGCgGGC-CGACGGG-GGgCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 86962 | 0.66 | 0.421956 |
Target: 5'- aCCGUgaagcacaCGUCCGGCggcagcacgGCgCCCUCGUGGCc -3' miRNA: 3'- cGGCA--------GCGGGCCGa--------CG-GGGGGCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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