miRNA display CGI


Results 41 - 60 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 133795 0.66 0.438595
Target:  5'- cGCauccCGCCCgGGCUGCUCgaCgGCGACg -3'
miRNA:   3'- -CGgca-GCGGG-CCGACGGGg-GgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 103388 0.66 0.413781
Target:  5'- cGCCG-CGCCgCGGCcGCCugcgccuccagCUCCGCG-Cg -3'
miRNA:   3'- -CGGCaGCGG-GCCGaCGG-----------GGGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 95804 0.66 0.397726
Target:  5'- aGCCGgCG-CCGGCggggGCUcgcgguCCUCGCGGCg -3'
miRNA:   3'- -CGGCaGCgGGCCGa---CGG------GGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 114994 0.66 0.397726
Target:  5'- gGCCGgcCGCCgCGGCcccgGCCCCgCGgaGGCc -3'
miRNA:   3'- -CGGCa-GCGG-GCCGa---CGGGGgGCg-CUG- -5'
23560 5' -66.9 NC_005261.1 + 102423 0.66 0.413781
Target:  5'- uGCCGcUGCgCGGCcGCCUCCU-CGGCg -3'
miRNA:   3'- -CGGCaGCGgGCCGaCGGGGGGcGCUG- -5'
23560 5' -66.9 NC_005261.1 + 133104 0.66 0.430228
Target:  5'- cGCCGUCaaCCGcGCgGCCUUCCaCGGCg -3'
miRNA:   3'- -CGGCAGcgGGC-CGaCGGGGGGcGCUG- -5'
23560 5' -66.9 NC_005261.1 + 55984 0.66 0.438595
Target:  5'- cGCCGUCGCCauCGGCaa----CCGCGGCg -3'
miRNA:   3'- -CGGCAGCGG--GCCGacggggGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 73344 0.66 0.438595
Target:  5'- cGUCGUcucCGCCCGGCgccgGCUCag-GCGGCg -3'
miRNA:   3'- -CGGCA---GCGGGCCGa---CGGGgggCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 87354 0.66 0.430228
Target:  5'- gGCCGUCuCggGGCUagcGCCCaCCgCGCGGCa -3'
miRNA:   3'- -CGGCAGcGggCCGA---CGGG-GG-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 55416 0.66 0.421956
Target:  5'- -aCGcgCGCgCCGGCUGgCgCCaCCGCGAg -3'
miRNA:   3'- cgGCa-GCG-GGCCGACgG-GG-GGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 86962 0.66 0.421956
Target:  5'- aCCGUgaagcacaCGUCCGGCggcagcacgGCgCCCUCGUGGCc -3'
miRNA:   3'- cGGCA--------GCGGGCCGa--------CG-GGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 42561 0.66 0.430228
Target:  5'- uGCUcUUGCCCGaGCccgcGUUCCCCGUGAUa -3'
miRNA:   3'- -CGGcAGCGGGC-CGa---CGGGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 50805 0.66 0.438595
Target:  5'- cGCCGcCGCCauGacggGCUCCgCGCGGCu -3'
miRNA:   3'- -CGGCaGCGGgcCga--CGGGGgGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 43460 0.66 0.408922
Target:  5'- -aCGUCGCCgGGCgggUGCuggcggagugcgaggCCUUCGCGGCg -3'
miRNA:   3'- cgGCAGCGGgCCG---ACG---------------GGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 100107 0.66 0.408922
Target:  5'- uGCCGcCGCCCagcggcgcccgcaccGGCcGCagCCCCCGCucGGCc -3'
miRNA:   3'- -CGGCaGCGGG---------------CCGaCG--GGGGGCG--CUG- -5'
23560 5' -66.9 NC_005261.1 + 9867 0.66 0.417039
Target:  5'- aGCCGgccUGcCCCGGCgaGCCCacccuagccggcccgCCCGgGGCa -3'
miRNA:   3'- -CGGCa--GC-GGGCCGa-CGGG---------------GGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 2183 0.66 0.405703
Target:  5'- aGUCGgCGCucagcagcagCCGGUUGCCCagcgCCGCGAg -3'
miRNA:   3'- -CGGCaGCG----------GGCCGACGGGg---GGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 131564 1.1 0.000246
Target:  5'- cGCCGUCGCCCGGCUGCCCCCCGCGACg -3'
miRNA:   3'- -CGGCAGCGGGCCGACGGGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 33468 0.66 0.397726
Target:  5'- aGCCGcCGCCgCaGCcggGCCCgCUCGCGGg -3'
miRNA:   3'- -CGGCaGCGG-GcCGa--CGGG-GGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 32414 0.66 0.405703
Target:  5'- uGCCGcCGCCggcgaCGGgaGCCCCgCCGgccugggcgcCGGCa -3'
miRNA:   3'- -CGGCaGCGG-----GCCgaCGGGG-GGC----------GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.