miRNA display CGI


Results 21 - 40 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 117673 0.77 0.081087
Target:  5'- cGCCG-CGCCCGGCcggGCCCgCgGCGAg -3'
miRNA:   3'- -CGGCaGCGGGCCGa--CGGGgGgCGCUg -5'
23560 5' -66.9 NC_005261.1 + 73035 0.77 0.081087
Target:  5'- aGCCGUCGCgCCacGC-GCCCCCCGCGcCu -3'
miRNA:   3'- -CGGCAGCG-GGc-CGaCGGGGGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 16400 0.76 0.084797
Target:  5'- cGUCGUCGCCgGGCggugcgggagagGCCCCCuCGaCGGCg -3'
miRNA:   3'- -CGGCAGCGGgCCGa-----------CGGGGG-GC-GCUG- -5'
23560 5' -66.9 NC_005261.1 + 64551 0.76 0.085219
Target:  5'- aGCCGUCuaaGCCCGcGCccGCCCUCCGCGuCg -3'
miRNA:   3'- -CGGCAG---CGGGC-CGa-CGGGGGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 125676 0.76 0.08955
Target:  5'- -gCGUUGCCCGGCgcggGgCCCCCGCGuAUa -3'
miRNA:   3'- cgGCAGCGGGCCGa---CgGGGGGCGC-UG- -5'
23560 5' -66.9 NC_005261.1 + 35573 0.76 0.092706
Target:  5'- cGCCGcgcuauccuccaUCGCCCGGaccccagcgcccgGCCCCgCCGCGGCa -3'
miRNA:   3'- -CGGC------------AGCGGGCCga-----------CGGGG-GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 50060 0.76 0.093396
Target:  5'- cGCCGgcgucgccccgGCCCGGCUgcgcggccggggcGCCCCCgCGCGGCg -3'
miRNA:   3'- -CGGCag---------CGGGCCGA-------------CGGGGG-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 83041 0.75 0.101311
Target:  5'- gGCCGcUCGCCgCGGgagggggcuccCUGCgcgCCCCCGCGGCg -3'
miRNA:   3'- -CGGC-AGCGG-GCC-----------GACG---GGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 56170 0.75 0.103832
Target:  5'- cGCCGUCGaCCCGGCgacgUGgCCCgCGCuGACg -3'
miRNA:   3'- -CGGCAGC-GGGCCG----ACgGGGgGCG-CUG- -5'
23560 5' -66.9 NC_005261.1 + 128785 0.75 0.103832
Target:  5'- cGCCGUUGUCUGGgC-GCCCgggCCCGCGGCg -3'
miRNA:   3'- -CGGCAGCGGGCC-GaCGGG---GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 73694 0.75 0.103832
Target:  5'- gGUCGUgGuCCCGGacCUGCCCCCCGaCGAg -3'
miRNA:   3'- -CGGCAgC-GGGCC--GACGGGGGGC-GCUg -5'
23560 5' -66.9 NC_005261.1 + 94930 0.75 0.106412
Target:  5'- gGCCGg-GCugCCGGC-GCCCCCCGCGGg -3'
miRNA:   3'- -CGGCagCG--GGCCGaCGGGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 124559 0.75 0.106412
Target:  5'- cCCGcgCGCCCcGCgccCCCCCCGCGGCg -3'
miRNA:   3'- cGGCa-GCGGGcCGac-GGGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 62766 0.75 0.106412
Target:  5'- cGCCGcCGCCCGGC-GCCuggaacuggCCCCGUGGg -3'
miRNA:   3'- -CGGCaGCGGGCCGaCGG---------GGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 46967 0.75 0.106412
Target:  5'- cGCCGUCGCCgCuGCcGCCgCCCGcCGGCa -3'
miRNA:   3'- -CGGCAGCGG-GcCGaCGGgGGGC-GCUG- -5'
23560 5' -66.9 NC_005261.1 + 32633 0.75 0.106412
Target:  5'- aGCCGggcUCGCCCuggagcggGGCcaGCCCCCCGCGcCg -3'
miRNA:   3'- -CGGC---AGCGGG--------CCGa-CGGGGGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 137150 0.75 0.106412
Target:  5'- aGCCGggcUCGCCCuggagcggGGCcaGCCCCCCGCGcCg -3'
miRNA:   3'- -CGGC---AGCGGG--------CCGa-CGGGGGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 42458 0.75 0.110936
Target:  5'- cGCCGgCGCagcgcgcgaggcucCCGGC-GCCCCCgGCGGCg -3'
miRNA:   3'- -CGGCaGCG--------------GGCCGaCGGGGGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 94427 0.75 0.111753
Target:  5'- gGgCG-CGCCCGGC-GCCCccucaCCCGCGGCg -3'
miRNA:   3'- -CgGCaGCGGGCCGaCGGG-----GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 6133 0.75 0.111753
Target:  5'- aGCgCGUCGC--GGCcGCCCUCCGCGGCa -3'
miRNA:   3'- -CG-GCAGCGggCCGaCGGGGGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.