miRNA display CGI


Results 21 - 40 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 95545 0.66 0.438595
Target:  5'- gGCgGcCGCgCGGCUGCCggCgGCGGCc -3'
miRNA:   3'- -CGgCaGCGgGCCGACGGggGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 77061 0.66 0.438595
Target:  5'- nCCG-CGCCUGGCcgGUgCCgCGCGAg -3'
miRNA:   3'- cGGCaGCGGGCCGa-CGgGGgGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 87945 0.66 0.438595
Target:  5'- aGCCG-CGCgCCGcCacgGCCCgCCgGCGGCg -3'
miRNA:   3'- -CGGCaGCG-GGCcGa--CGGG-GGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 17313 0.66 0.438595
Target:  5'- gGCCGgggucgCgGCCCGGCccgGCCcagcucccgCCCCGCccgGGCa -3'
miRNA:   3'- -CGGCa-----G-CGGGCCGa--CGG---------GGGGCG---CUG- -5'
23560 5' -66.9 NC_005261.1 + 57261 0.66 0.437754
Target:  5'- cGCCGcacacgcuccgcaUCGCgCGGCaGCUgCUCGCGAg -3'
miRNA:   3'- -CGGC-------------AGCGgGCCGaCGGgGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 11199 0.66 0.437754
Target:  5'- cGuuGUUGUuuuuaaauaaacgCCGcGUgGCCCCCCGCGGg -3'
miRNA:   3'- -CggCAGCG-------------GGC-CGaCGGGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 115717 0.66 0.437754
Target:  5'- cGuuGUUGUuuuuaaauaaacgCCGcGUgGCCCCCCGCGGg -3'
miRNA:   3'- -CggCAGCG-------------GGC-CGaCGGGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 70567 0.66 0.430228
Target:  5'- aCCG-CGCCUGGC-GCCgCgCGCgGACg -3'
miRNA:   3'- cGGCaGCGGGCCGaCGGgGgGCG-CUG- -5'
23560 5' -66.9 NC_005261.1 + 133104 0.66 0.430228
Target:  5'- cGCCGUCaaCCGcGCgGCCUUCCaCGGCg -3'
miRNA:   3'- -CGGCAGcgGGC-CGaCGGGGGGcGCUG- -5'
23560 5' -66.9 NC_005261.1 + 89041 0.66 0.430228
Target:  5'- cGCUGUCggccgaggGCCUGGCcgagcaCCCCgCCGUGGCc -3'
miRNA:   3'- -CGGCAG--------CGGGCCGac----GGGG-GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 80733 0.66 0.430228
Target:  5'- cCCGcCGCCgGGacgUGCCCgUCGCGGg -3'
miRNA:   3'- cGGCaGCGGgCCg--ACGGGgGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 58154 0.66 0.430228
Target:  5'- cGCCGguccgCGUCCcccacGCCCCCCGCGcCc -3'
miRNA:   3'- -CGGCa----GCGGGccga-CGGGGGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 36568 0.66 0.430228
Target:  5'- aGCCGa-GCUgagCGGggGCCCgCCGCGGCc -3'
miRNA:   3'- -CGGCagCGG---GCCgaCGGGgGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 12448 0.66 0.430228
Target:  5'- cCCGuUCGCagCGGCcuugGCCUuagccgagCCCGCGGCa -3'
miRNA:   3'- cGGC-AGCGg-GCCGa---CGGG--------GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 81509 0.66 0.430228
Target:  5'- cGCCGaugCGCUCGGCgugGUCCCUuagcaGCGuCg -3'
miRNA:   3'- -CGGCa--GCGGGCCGa--CGGGGGg----CGCuG- -5'
23560 5' -66.9 NC_005261.1 + 88982 0.66 0.430228
Target:  5'- cGCCGacgcCGCCgCGGCggcgGCCgaCCUGCGcGCg -3'
miRNA:   3'- -CGGCa---GCGG-GCCGa---CGGg-GGGCGC-UG- -5'
23560 5' -66.9 NC_005261.1 + 115492 0.66 0.430228
Target:  5'- cGCCGcCGCCCcgcgcccgacuGGCgcugGUCCUCCGgcuccuCGACg -3'
miRNA:   3'- -CGGCaGCGGG-----------CCGa---CGGGGGGC------GCUG- -5'
23560 5' -66.9 NC_005261.1 + 45415 0.66 0.430228
Target:  5'- uGCUGcggCGCCUGcGCccGCCgCCCGCGcGCa -3'
miRNA:   3'- -CGGCa--GCGGGC-CGa-CGGgGGGCGC-UG- -5'
23560 5' -66.9 NC_005261.1 + 78855 0.66 0.430228
Target:  5'- cGCCGUgGCgCgGGCgcugGCgggcgacaCCCUCGUGGCg -3'
miRNA:   3'- -CGGCAgCG-GgCCGa---CG--------GGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 57425 0.66 0.430228
Target:  5'- cGCCGcgaGCCCaGGaUGCgCaCCCgCGCGACg -3'
miRNA:   3'- -CGGCag-CGGG-CCgACG-G-GGG-GCGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.