Results 21 - 40 of 617 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 95545 | 0.66 | 0.438595 |
Target: 5'- gGCgGcCGCgCGGCUGCCggCgGCGGCc -3' miRNA: 3'- -CGgCaGCGgGCCGACGGggGgCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 77061 | 0.66 | 0.438595 |
Target: 5'- nCCG-CGCCUGGCcgGUgCCgCGCGAg -3' miRNA: 3'- cGGCaGCGGGCCGa-CGgGGgGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 87945 | 0.66 | 0.438595 |
Target: 5'- aGCCG-CGCgCCGcCacgGCCCgCCgGCGGCg -3' miRNA: 3'- -CGGCaGCG-GGCcGa--CGGG-GGgCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 17313 | 0.66 | 0.438595 |
Target: 5'- gGCCGgggucgCgGCCCGGCccgGCCcagcucccgCCCCGCccgGGCa -3' miRNA: 3'- -CGGCa-----G-CGGGCCGa--CGG---------GGGGCG---CUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 57261 | 0.66 | 0.437754 |
Target: 5'- cGCCGcacacgcuccgcaUCGCgCGGCaGCUgCUCGCGAg -3' miRNA: 3'- -CGGC-------------AGCGgGCCGaCGGgGGGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 11199 | 0.66 | 0.437754 |
Target: 5'- cGuuGUUGUuuuuaaauaaacgCCGcGUgGCCCCCCGCGGg -3' miRNA: 3'- -CggCAGCG-------------GGC-CGaCGGGGGGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 115717 | 0.66 | 0.437754 |
Target: 5'- cGuuGUUGUuuuuaaauaaacgCCGcGUgGCCCCCCGCGGg -3' miRNA: 3'- -CggCAGCG-------------GGC-CGaCGGGGGGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 70567 | 0.66 | 0.430228 |
Target: 5'- aCCG-CGCCUGGC-GCCgCgCGCgGACg -3' miRNA: 3'- cGGCaGCGGGCCGaCGGgGgGCG-CUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 133104 | 0.66 | 0.430228 |
Target: 5'- cGCCGUCaaCCGcGCgGCCUUCCaCGGCg -3' miRNA: 3'- -CGGCAGcgGGC-CGaCGGGGGGcGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 89041 | 0.66 | 0.430228 |
Target: 5'- cGCUGUCggccgaggGCCUGGCcgagcaCCCCgCCGUGGCc -3' miRNA: 3'- -CGGCAG--------CGGGCCGac----GGGG-GGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 80733 | 0.66 | 0.430228 |
Target: 5'- cCCGcCGCCgGGacgUGCCCgUCGCGGg -3' miRNA: 3'- cGGCaGCGGgCCg--ACGGGgGGCGCUg -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 58154 | 0.66 | 0.430228 |
Target: 5'- cGCCGguccgCGUCCcccacGCCCCCCGCGcCc -3' miRNA: 3'- -CGGCa----GCGGGccga-CGGGGGGCGCuG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 36568 | 0.66 | 0.430228 |
Target: 5'- aGCCGa-GCUgagCGGggGCCCgCCGCGGCc -3' miRNA: 3'- -CGGCagCGG---GCCgaCGGGgGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 12448 | 0.66 | 0.430228 |
Target: 5'- cCCGuUCGCagCGGCcuugGCCUuagccgagCCCGCGGCa -3' miRNA: 3'- cGGC-AGCGg-GCCGa---CGGG--------GGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 81509 | 0.66 | 0.430228 |
Target: 5'- cGCCGaugCGCUCGGCgugGUCCCUuagcaGCGuCg -3' miRNA: 3'- -CGGCa--GCGGGCCGa--CGGGGGg----CGCuG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 88982 | 0.66 | 0.430228 |
Target: 5'- cGCCGacgcCGCCgCGGCggcgGCCgaCCUGCGcGCg -3' miRNA: 3'- -CGGCa---GCGG-GCCGa---CGGg-GGGCGC-UG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 115492 | 0.66 | 0.430228 |
Target: 5'- cGCCGcCGCCCcgcgcccgacuGGCgcugGUCCUCCGgcuccuCGACg -3' miRNA: 3'- -CGGCaGCGGG-----------CCGa---CGGGGGGC------GCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 45415 | 0.66 | 0.430228 |
Target: 5'- uGCUGcggCGCCUGcGCccGCCgCCCGCGcGCa -3' miRNA: 3'- -CGGCa--GCGGGC-CGa-CGGgGGGCGC-UG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 78855 | 0.66 | 0.430228 |
Target: 5'- cGCCGUgGCgCgGGCgcugGCgggcgacaCCCUCGUGGCg -3' miRNA: 3'- -CGGCAgCG-GgCCGa---CG--------GGGGGCGCUG- -5' |
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23560 | 5' | -66.9 | NC_005261.1 | + | 57425 | 0.66 | 0.430228 |
Target: 5'- cGCCGcgaGCCCaGGaUGCgCaCCCgCGCGACg -3' miRNA: 3'- -CGGCag-CGGG-CCgACG-G-GGG-GCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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