Results 41 - 60 of 617 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 57425 | 0.66 | 0.430228 |
Target: 5'- cGCCGcgaGCCCaGGaUGCgCaCCCgCGCGACg -3' miRNA: 3'- -CGGCag-CGGG-CCgACG-G-GGG-GCGCUG- -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 36568 | 0.66 | 0.430228 |
Target: 5'- aGCCGa-GCUgagCGGggGCCCgCCGCGGCc -3' miRNA: 3'- -CGGCagCGG---GCCgaCGGGgGGCGCUG- -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 42561 | 0.66 | 0.430228 |
Target: 5'- uGCUcUUGCCCGaGCccgcGUUCCCCGUGAUa -3' miRNA: 3'- -CGGcAGCGGGC-CGa---CGGGGGGCGCUG- -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 133104 | 0.66 | 0.430228 |
Target: 5'- cGCCGUCaaCCGcGCgGCCUUCCaCGGCg -3' miRNA: 3'- -CGGCAGcgGGC-CGaCGGGGGGcGCUG- -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 55406 | 0.66 | 0.429397 |
Target: 5'- uGCCG-CGCgggaggcgcggcaCCGGCUGCagguggCCGCGGCg -3' miRNA: 3'- -CGGCaGCG-------------GGCCGACGggg---GGCGCUG- -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 44283 | 0.66 | 0.427737 |
Target: 5'- gGCCGacCGCCCGGaggcggcGCCCgcggacggcgcaagCCCGCGGg -3' miRNA: 3'- -CGGCa-GCGGGCCga-----CGGG--------------GGGCGCUg -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 67137 | 0.66 | 0.425254 |
Target: 5'- cGCCGUguacgccuucucggGCCCGGaCgccccGCCCgCCgCGCGGCg -3' miRNA: 3'- -CGGCAg-------------CGGGCC-Ga----CGGG-GG-GCGCUG- -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 135044 | 0.66 | 0.421956 |
Target: 5'- gGCCGaCGCCugCGGCggcagcgGCCCgCCGCuuuccGGCg -3' miRNA: 3'- -CGGCaGCGG--GCCGa------CGGGgGGCG-----CUG- -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 79941 | 0.66 | 0.421956 |
Target: 5'- cCCG-CGCCCcccGGCgcgccgGCCCCgugagCGCGGCg -3' miRNA: 3'- cGGCaGCGGG---CCGa-----CGGGGg----GCGCUG- -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 61137 | 0.66 | 0.421956 |
Target: 5'- gGCCGUcgagagcagCGUCCGcGCcagcGCCUCgCGCGGCa -3' miRNA: 3'- -CGGCA---------GCGGGC-CGa---CGGGGgGCGCUG- -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 16957 | 0.66 | 0.421956 |
Target: 5'- -gCGagGCCgGGCgGCCgCCCCgucuGCGGCg -3' miRNA: 3'- cgGCagCGGgCCGaCGG-GGGG----CGCUG- -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 29193 | 0.66 | 0.421956 |
Target: 5'- gGCgGcCGCgCGGCUGCgCgCCaCgGCGGCg -3' miRNA: 3'- -CGgCaGCGgGCCGACG-G-GG-GgCGCUG- -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 80039 | 0.66 | 0.421956 |
Target: 5'- cGCCGUCGCCgCcGUcGCCaCUgGCGGCg -3' miRNA: 3'- -CGGCAGCGG-GcCGaCGGgGGgCGCUG- -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 105186 | 0.66 | 0.421956 |
Target: 5'- cGCCGcCGCCgCGGCagGCUcguccgcuuUCCCGCcGCg -3' miRNA: 3'- -CGGCaGCGG-GCCGa-CGG---------GGGGCGcUG- -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 86962 | 0.66 | 0.421956 |
Target: 5'- aCCGUgaagcacaCGUCCGGCggcagcacgGCgCCCUCGUGGCc -3' miRNA: 3'- cGGCA--------GCGGGCCGa--------CG-GGGGGCGCUG- -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 117575 | 0.66 | 0.421956 |
Target: 5'- uGCCGccccgCGCCCGccGCUGUCgaUCCUGcCGACg -3' miRNA: 3'- -CGGCa----GCGGGC--CGACGG--GGGGC-GCUG- -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 76019 | 0.66 | 0.421956 |
Target: 5'- cGCCGcgcagCGCCgCgGGC-GCCCCgCGCGcCa -3' miRNA: 3'- -CGGCa----GCGG-G-CCGaCGGGGgGCGCuG- -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 55416 | 0.66 | 0.421956 |
Target: 5'- -aCGcgCGCgCCGGCUGgCgCCaCCGCGAg -3' miRNA: 3'- cgGCa-GCG-GGCCGACgG-GG-GGCGCUg -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 108887 | 0.66 | 0.421956 |
Target: 5'- -aCGaCGgCCGcGCUGCCCgCCgGCGAg -3' miRNA: 3'- cgGCaGCgGGC-CGACGGG-GGgCGCUg -5' |
|||||||
23560 | 5' | -66.9 | NC_005261.1 | + | 13788 | 0.66 | 0.421956 |
Target: 5'- cGCCc-UGCCCGGCgggGUCCCaaGCGuCg -3' miRNA: 3'- -CGGcaGCGGGCCGa--CGGGGggCGCuG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home