miRNA display CGI


Results 41 - 60 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 57425 0.66 0.430228
Target:  5'- cGCCGcgaGCCCaGGaUGCgCaCCCgCGCGACg -3'
miRNA:   3'- -CGGCag-CGGG-CCgACG-G-GGG-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 36568 0.66 0.430228
Target:  5'- aGCCGa-GCUgagCGGggGCCCgCCGCGGCc -3'
miRNA:   3'- -CGGCagCGG---GCCgaCGGGgGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 42561 0.66 0.430228
Target:  5'- uGCUcUUGCCCGaGCccgcGUUCCCCGUGAUa -3'
miRNA:   3'- -CGGcAGCGGGC-CGa---CGGGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 133104 0.66 0.430228
Target:  5'- cGCCGUCaaCCGcGCgGCCUUCCaCGGCg -3'
miRNA:   3'- -CGGCAGcgGGC-CGaCGGGGGGcGCUG- -5'
23560 5' -66.9 NC_005261.1 + 55406 0.66 0.429397
Target:  5'- uGCCG-CGCgggaggcgcggcaCCGGCUGCagguggCCGCGGCg -3'
miRNA:   3'- -CGGCaGCG-------------GGCCGACGggg---GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 44283 0.66 0.427737
Target:  5'- gGCCGacCGCCCGGaggcggcGCCCgcggacggcgcaagCCCGCGGg -3'
miRNA:   3'- -CGGCa-GCGGGCCga-----CGGG--------------GGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 67137 0.66 0.425254
Target:  5'- cGCCGUguacgccuucucggGCCCGGaCgccccGCCCgCCgCGCGGCg -3'
miRNA:   3'- -CGGCAg-------------CGGGCC-Ga----CGGG-GG-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 135044 0.66 0.421956
Target:  5'- gGCCGaCGCCugCGGCggcagcgGCCCgCCGCuuuccGGCg -3'
miRNA:   3'- -CGGCaGCGG--GCCGa------CGGGgGGCG-----CUG- -5'
23560 5' -66.9 NC_005261.1 + 79941 0.66 0.421956
Target:  5'- cCCG-CGCCCcccGGCgcgccgGCCCCgugagCGCGGCg -3'
miRNA:   3'- cGGCaGCGGG---CCGa-----CGGGGg----GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 61137 0.66 0.421956
Target:  5'- gGCCGUcgagagcagCGUCCGcGCcagcGCCUCgCGCGGCa -3'
miRNA:   3'- -CGGCA---------GCGGGC-CGa---CGGGGgGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 16957 0.66 0.421956
Target:  5'- -gCGagGCCgGGCgGCCgCCCCgucuGCGGCg -3'
miRNA:   3'- cgGCagCGGgCCGaCGG-GGGG----CGCUG- -5'
23560 5' -66.9 NC_005261.1 + 29193 0.66 0.421956
Target:  5'- gGCgGcCGCgCGGCUGCgCgCCaCgGCGGCg -3'
miRNA:   3'- -CGgCaGCGgGCCGACG-G-GG-GgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 80039 0.66 0.421956
Target:  5'- cGCCGUCGCCgCcGUcGCCaCUgGCGGCg -3'
miRNA:   3'- -CGGCAGCGG-GcCGaCGGgGGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 105186 0.66 0.421956
Target:  5'- cGCCGcCGCCgCGGCagGCUcguccgcuuUCCCGCcGCg -3'
miRNA:   3'- -CGGCaGCGG-GCCGa-CGG---------GGGGCGcUG- -5'
23560 5' -66.9 NC_005261.1 + 86962 0.66 0.421956
Target:  5'- aCCGUgaagcacaCGUCCGGCggcagcacgGCgCCCUCGUGGCc -3'
miRNA:   3'- cGGCA--------GCGGGCCGa--------CG-GGGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 117575 0.66 0.421956
Target:  5'- uGCCGccccgCGCCCGccGCUGUCgaUCCUGcCGACg -3'
miRNA:   3'- -CGGCa----GCGGGC--CGACGG--GGGGC-GCUG- -5'
23560 5' -66.9 NC_005261.1 + 76019 0.66 0.421956
Target:  5'- cGCCGcgcagCGCCgCgGGC-GCCCCgCGCGcCa -3'
miRNA:   3'- -CGGCa----GCGG-G-CCGaCGGGGgGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 55416 0.66 0.421956
Target:  5'- -aCGcgCGCgCCGGCUGgCgCCaCCGCGAg -3'
miRNA:   3'- cgGCa-GCG-GGCCGACgG-GG-GGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 108887 0.66 0.421956
Target:  5'- -aCGaCGgCCGcGCUGCCCgCCgGCGAg -3'
miRNA:   3'- cgGCaGCgGGC-CGACGGG-GGgCGCUg -5'
23560 5' -66.9 NC_005261.1 + 13788 0.66 0.421956
Target:  5'- cGCCc-UGCCCGGCgggGUCCCaaGCGuCg -3'
miRNA:   3'- -CGGcaGCGGGCCGa--CGGGGggCGCuG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.