miRNA display CGI


Results 1 - 20 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 137985 0.66 0.397726
Target:  5'- aGCCGcCGCCgCaGCcggGCCCgCUCGCGGg -3'
miRNA:   3'- -CGGCaGCGG-GcCGa--CGGG-GGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 137895 0.68 0.303592
Target:  5'- cGCCGcCGCCCcuGgUGCUcgcgggCCCCGCGAg -3'
miRNA:   3'- -CGGCaGCGGGc-CgACGG------GGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 137887 0.69 0.266286
Target:  5'- gGCCG-CGCCgGGCUGCgggCCgCCGCaGCc -3'
miRNA:   3'- -CGGCaGCGGgCCGACG---GGgGGCGcUG- -5'
23560 5' -66.9 NC_005261.1 + 137796 0.68 0.310187
Target:  5'- cGCCGccCGCgCCGGCgccGCCCCUggugcuCGCGGg -3'
miRNA:   3'- -CGGCa-GCG-GGCCGa--CGGGGG------GCGCUg -5'
23560 5' -66.9 NC_005261.1 + 137695 0.75 0.111753
Target:  5'- aGCCGcCGUCCGccCUGCCCCCCGCc-- -3'
miRNA:   3'- -CGGCaGCGGGCc-GACGGGGGGCGcug -5'
23560 5' -66.9 NC_005261.1 + 137606 0.69 0.29136
Target:  5'- gGCCGcCGCCacauccccugcgucgGGCacucGCCCUCCGCGAa -3'
miRNA:   3'- -CGGCaGCGGg--------------CCGa---CGGGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 137194 0.72 0.168265
Target:  5'- cGCCGcCGCCC-GCcGCCCUCCGCa-- -3'
miRNA:   3'- -CGGCaGCGGGcCGaCGGGGGGCGcug -5'
23560 5' -66.9 NC_005261.1 + 137150 0.75 0.106412
Target:  5'- aGCCGggcUCGCCCuggagcggGGCcaGCCCCCCGCGcCg -3'
miRNA:   3'- -CGGC---AGCGGG--------CCGa-CGGGGGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 137041 0.84 0.022831
Target:  5'- cGCCG-CGCCCGGCcccgGCCCCggCCGCGGCg -3'
miRNA:   3'- -CGGCaGCGGGCCGa---CGGGG--GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 136931 0.66 0.405703
Target:  5'- uGCCGcCGCCggcgaCGGgaGCCCCgCCGgccugggcgcCGGCa -3'
miRNA:   3'- -CGGCaGCGG-----GCCgaCGGGG-GGC----------GCUG- -5'
23560 5' -66.9 NC_005261.1 + 136842 0.69 0.266286
Target:  5'- gGCCGcggCGCCCGGCgugGCCUgggaCGCGGa -3'
miRNA:   3'- -CGGCa--GCGGGCCGa--CGGGgg--GCGCUg -5'
23560 5' -66.9 NC_005261.1 + 136722 0.72 0.168265
Target:  5'- aGCUG-CGCCCGacgaGCUGCCggCCGCGGCg -3'
miRNA:   3'- -CGGCaGCGGGC----CGACGGggGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 136291 0.67 0.344788
Target:  5'- cCUGcgCGCCgCGG-UGCUgCCCGCGGCg -3'
miRNA:   3'- cGGCa-GCGG-GCCgACGGgGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 136101 0.69 0.283835
Target:  5'- cGCCGgacgugagcgCGCUCGGCgcgcagggcgugcUGCUgCUCGCGACg -3'
miRNA:   3'- -CGGCa---------GCGGGCCG-------------ACGGgGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 135765 0.68 0.330622
Target:  5'- aGCCcuggCGCCCGGCgcucGCCuucgaCCCCGaGGCg -3'
miRNA:   3'- -CGGca--GCGGGCCGa---CGG-----GGGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 135695 0.66 0.413781
Target:  5'- cGCCGcggCGCUggCGGCcuacUGCCgCCCCgagucGCGGCg -3'
miRNA:   3'- -CGGCa--GCGG--GCCG----ACGG-GGGG-----CGCUG- -5'
23560 5' -66.9 NC_005261.1 + 135612 0.77 0.075247
Target:  5'- gGCCccauGcCGCCCGGCgGCCCCgCCGcCGACg -3'
miRNA:   3'- -CGG----CaGCGGGCCGaCGGGG-GGC-GCUG- -5'
23560 5' -66.9 NC_005261.1 + 135552 0.66 0.392988
Target:  5'- aGCCGgcgCGCCgccggguccccagcgCGGCgggagccgccgcUGCCCgCCCGCGuGCu -3'
miRNA:   3'- -CGGCa--GCGG---------------GCCG------------ACGGG-GGGCGC-UG- -5'
23560 5' -66.9 NC_005261.1 + 135477 0.7 0.249067
Target:  5'- cUCGagGCCCGccGCgacgGCCCgCCGCGGCg -3'
miRNA:   3'- cGGCagCGGGC--CGa---CGGGgGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 135422 0.71 0.193693
Target:  5'- gGCUGgggcCGCCCGGCcccucccgGCCgCCgGCGGCa -3'
miRNA:   3'- -CGGCa---GCGGGCCGa-------CGGgGGgCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.