miRNA display CGI


Results 21 - 40 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 135044 0.66 0.421956
Target:  5'- gGCCGaCGCCugCGGCggcagcgGCCCgCCGCuuuccGGCg -3'
miRNA:   3'- -CGGCaGCGG--GCCGa------CGGGgGGCG-----CUG- -5'
23560 5' -66.9 NC_005261.1 + 134995 0.71 0.212464
Target:  5'- cGCCGgggCGCCCcuGGCgcggcggGCCCgCaCGCGGCc -3'
miRNA:   3'- -CGGCa--GCGGG--CCGa------CGGGgG-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 134848 0.68 0.323702
Target:  5'- uGCCGgcgCGgCUGGCgGCCgCgCUCGCGGCc -3'
miRNA:   3'- -CGGCa--GCgGGCCGaCGG-G-GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 134685 0.67 0.374407
Target:  5'- cGCCG-CGCCCGccgcGCUGCgCgCCGaGGCg -3'
miRNA:   3'- -CGGCaGCGGGC----CGACGgGgGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 134376 0.68 0.310852
Target:  5'- cGCCGgccgCGCggcgCCGGCgccgcugccgccagcGCCCgggCCCGCGGCa -3'
miRNA:   3'- -CGGCa---GCG----GGCCGa--------------CGGG---GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 134146 0.7 0.243535
Target:  5'- gGCUG-CGCCUGGC-GCCaCCCGgGGCu -3'
miRNA:   3'- -CGGCaGCGGGCCGaCGGgGGGCgCUG- -5'
23560 5' -66.9 NC_005261.1 + 133923 0.67 0.374407
Target:  5'- gGCCGcgCGCUacgCGGCgGCCgcggggCCCGCGGCc -3'
miRNA:   3'- -CGGCa-GCGG---GCCGaCGGg-----GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 133870 0.66 0.38985
Target:  5'- uGCCG-CGCCUaccuguGGuCUGCgCaagCCCGCGGCg -3'
miRNA:   3'- -CGGCaGCGGG------CC-GACG-Gg--GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 133841 0.74 0.120237
Target:  5'- cGCCGcCGCCCGGCcgcgUGCgCUUCgGCGGCg -3'
miRNA:   3'- -CGGCaGCGGGCCG----ACG-GGGGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 133795 0.66 0.438595
Target:  5'- cGCauccCGCCCgGGCUGCUCgaCgGCGACg -3'
miRNA:   3'- -CGgca-GCGGG-CCGACGGGg-GgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 133694 0.73 0.156704
Target:  5'- gGCCaggGCCCGGC-GCCCUcgCCGCGGCg -3'
miRNA:   3'- -CGGcagCGGGCCGaCGGGG--GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 133651 0.68 0.297105
Target:  5'- cGCCGgggggCGCCCcGCcgGaCCCgCCCGCGGa -3'
miRNA:   3'- -CGGCa----GCGGGcCGa-C-GGG-GGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 133359 0.7 0.232778
Target:  5'- uGCCG-CGCagggcuUCGGCUGCCUgCgCGCGGCc -3'
miRNA:   3'- -CGGCaGCG------GGCCGACGGGgG-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 133276 0.67 0.352033
Target:  5'- cGCCG-CGgCCGGggGCgCCUgggCCGCGGCg -3'
miRNA:   3'- -CGGCaGCgGGCCgaCG-GGG---GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 133104 0.66 0.430228
Target:  5'- cGCCGUCaaCCGcGCgGCCUUCCaCGGCg -3'
miRNA:   3'- -CGGCAGcgGGC-CGaCGGGGGGcGCUG- -5'
23560 5' -66.9 NC_005261.1 + 133093 0.68 0.323016
Target:  5'- gGCCGaggCGCgcgagcgCCGGCggGCCgCCCGCGcCg -3'
miRNA:   3'- -CGGCa--GCG-------GGCCGa-CGGgGGGCGCuG- -5'
23560 5' -66.9 NC_005261.1 + 132703 0.68 0.337651
Target:  5'- gGCCGUgccCGuCCCGGC-GCCCUaccucaUUGCGGCg -3'
miRNA:   3'- -CGGCA---GC-GGGCCGaCGGGG------GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 132677 0.67 0.366843
Target:  5'- uCCGcCGCUCgGGC-GCCCCCCGUc-- -3'
miRNA:   3'- cGGCaGCGGG-CCGaCGGGGGGCGcug -5'
23560 5' -66.9 NC_005261.1 + 132489 0.67 0.344788
Target:  5'- cGCCGUC-CUgGGacgcGCCCgaCCGCGACg -3'
miRNA:   3'- -CGGCAGcGGgCCga--CGGGg-GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 132449 0.68 0.303592
Target:  5'- aGCgCGU-GCCCcucGGCcGCCCUCCGCGcCg -3'
miRNA:   3'- -CG-GCAgCGGG---CCGaCGGGGGGCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.