miRNA display CGI


Results 61 - 80 of 617 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23560 5' -66.9 NC_005261.1 + 41049 0.73 0.139027
Target:  5'- gGCCG-CgGCCCGGCcGgCgCCCGCGACc -3'
miRNA:   3'- -CGGCaG-CGGGCCGaCgGgGGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 117735 0.73 0.139027
Target:  5'- gGCCG-CGCgCUGGCgccgccGCCCCCaaCGCGACu -3'
miRNA:   3'- -CGGCaGCG-GGCCGa-----CGGGGG--GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 67521 0.73 0.139027
Target:  5'- -gCGUCGCCgCGGC-GCCCgCgGCGGCg -3'
miRNA:   3'- cgGCAGCGG-GCCGaCGGGgGgCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 3287 0.73 0.14241
Target:  5'- cGCCcUCGCCCaucGGCUcGUCCUCCGCGGu -3'
miRNA:   3'- -CGGcAGCGGG---CCGA-CGGGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 63013 0.73 0.14241
Target:  5'- gGCCG-CGCCCGcGCgggcGCCggcgCCCGCGGCg -3'
miRNA:   3'- -CGGCaGCGGGC-CGa---CGGg---GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 107854 0.73 0.145868
Target:  5'- cGCCGcCGCCCucgccGGCcGCCCgcgcgcucgcgCCCGCGGCc -3'
miRNA:   3'- -CGGCaGCGGG-----CCGaCGGG-----------GGGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 4891 0.73 0.149045
Target:  5'- aGCCGcggcCGCCucggcuucggcggCGGCUGCCuCCgCCGCGGCc -3'
miRNA:   3'- -CGGCa---GCGG-------------GCCGACGG-GG-GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 109408 0.73 0.149045
Target:  5'- aGCCGcggcCGCCucggcuucggcggCGGCUGCCuCCgCCGCGGCc -3'
miRNA:   3'- -CGGCa---GCGG-------------GCCGACGG-GG-GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 95574 0.73 0.149402
Target:  5'- gGCCGcCGCuuGGCUGgUUCCgCGCGGCc -3'
miRNA:   3'- -CGGCaGCGggCCGACgGGGG-GCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 91147 0.73 0.153014
Target:  5'- aGCCGUgcCGCCCGGCgagugGCCCgggcggcagcuCCCGCcgGGCu -3'
miRNA:   3'- -CGGCA--GCGGGCCGa----CGGG-----------GGGCG--CUG- -5'
23560 5' -66.9 NC_005261.1 + 37091 0.73 0.153014
Target:  5'- cGCCGcCGCgCGGCaGCCUCgCGCGAg -3'
miRNA:   3'- -CGGCaGCGgGCCGaCGGGGgGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 132082 0.73 0.153014
Target:  5'- cGCCGUCGCC--GCUGCCgCggagggcggCCGCGACg -3'
miRNA:   3'- -CGGCAGCGGgcCGACGGgG---------GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 119888 0.73 0.156332
Target:  5'- -aCGUCGCUCGuGCUGCgCCCCGgccuguaCGACa -3'
miRNA:   3'- cgGCAGCGGGC-CGACGgGGGGC-------GCUG- -5'
23560 5' -66.9 NC_005261.1 + 41261 0.73 0.156704
Target:  5'- gGCCGcgugaaucgCGCCCGGCgGCUgCCCCGcCGAUg -3'
miRNA:   3'- -CGGCa--------GCGGGCCGaCGG-GGGGC-GCUG- -5'
23560 5' -66.9 NC_005261.1 + 55945 0.73 0.156704
Target:  5'- aGCCGUUuggcucCCCGGCgccggGUCUCCCGCGAg -3'
miRNA:   3'- -CGGCAGc-----GGGCCGa----CGGGGGGCGCUg -5'
23560 5' -66.9 NC_005261.1 + 133694 0.73 0.156704
Target:  5'- gGCCaggGCCCGGC-GCCCUcgCCGCGGCg -3'
miRNA:   3'- -CGGcagCGGGCCGaCGGGG--GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 29176 0.73 0.156704
Target:  5'- gGCCaggGCCCGGC-GCCCUcgCCGCGGCg -3'
miRNA:   3'- -CGGcagCGGGCCGaCGGGG--GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 106563 0.73 0.156704
Target:  5'- gGCCGgcgCGCgCCGGCcccgggGCCgCCgCGCGGCg -3'
miRNA:   3'- -CGGCa--GCG-GGCCGa-----CGG-GGgGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 108238 0.73 0.156704
Target:  5'- cGCaCGU-GCCCGGCgugaaCCCCgCCGCGGCc -3'
miRNA:   3'- -CG-GCAgCGGGCCGac---GGGG-GGCGCUG- -5'
23560 5' -66.9 NC_005261.1 + 41127 0.72 0.160095
Target:  5'- gGCCG-CgGCCCGGCUgGCgCCCCCGgcccagcCGGCg -3'
miRNA:   3'- -CGGCaG-CGGGCCGA-CG-GGGGGC-------GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.