miRNA display CGI


Results 81 - 100 of 791 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 117897 0.66 0.551097
Target:  5'- gCCGCGGGCgucGCuCGU-GCGCGGCUc -3'
miRNA:   3'- -GGCGUCCGgu-CGcGCAcCGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 90630 0.66 0.551097
Target:  5'- cCCGCAGGgggcggcucCCucGCGCGc-GCGCGGCUc -3'
miRNA:   3'- -GGCGUCC---------GGu-CGCGCacCGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 12642 0.66 0.551097
Target:  5'- gCGCuuucgacCCGGCGCGUGGCGUuuGCg- -3'
miRNA:   3'- gGCGucc----GGUCGCGCACCGCGu-CGac -5'
23561 3' -62.9 NC_005261.1 + 87408 0.66 0.551097
Target:  5'- cUCGCGGcGCCAagccGCGCGgagcccgucaUGGCGgCGGCg- -3'
miRNA:   3'- -GGCGUC-CGGU----CGCGC----------ACCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 109793 0.66 0.551097
Target:  5'- aCGCcauGGCCGGcCGCgGUGcGCGCGGguccCUGg -3'
miRNA:   3'- gGCGu--CCGGUC-GCG-CAC-CGCGUC----GAC- -5'
23561 3' -62.9 NC_005261.1 + 10478 0.66 0.55013
Target:  5'- -aGCAGGCCGGCcCGcugcaccggcuuuUGcGCGCGGCc- -3'
miRNA:   3'- ggCGUCCGGUCGcGC-------------AC-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 13297 0.66 0.55013
Target:  5'- gCGCAGGUguGCGaCGggGGCcucguacGCAGCg- -3'
miRNA:   3'- gGCGUCCGguCGC-GCa-CCG-------CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 114995 0.66 0.55013
Target:  5'- -aGCAGGCCGGCcCGcugcaccggcuuuUGcGCGCGGCc- -3'
miRNA:   3'- ggCGUCCGGUCGcGC-------------AC-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 101596 0.66 0.548197
Target:  5'- cCCGCGcGCCGGCuucgcgccguuuguGCGccggGGCGCAGgaGc -3'
miRNA:   3'- -GGCGUcCGGUCG--------------CGCa---CCGCGUCgaC- -5'
23561 3' -62.9 NC_005261.1 + 79486 0.66 0.541447
Target:  5'- nCGCGGGaguuucuuaaCAGCGCGcucuGCGCGGCg- -3'
miRNA:   3'- gGCGUCCg---------GUCGCGCac--CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 98892 0.66 0.541447
Target:  5'- gCCGCGcgcagcuuGGCC-GCG-GcGGCGCGGUUGg -3'
miRNA:   3'- -GGCGU--------CCGGuCGCgCaCCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 82797 0.66 0.541447
Target:  5'- gCCGCucggaGGGCUcGCG-GUGGCGcCAGCc- -3'
miRNA:   3'- -GGCG-----UCCGGuCGCgCACCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 27293 0.66 0.541447
Target:  5'- gCCGCcGGgCGGCGCucgGUGcccaGCGCGGCa- -3'
miRNA:   3'- -GGCGuCCgGUCGCG---CAC----CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 99016 0.66 0.541447
Target:  5'- gCGCgaGGGCCAugGCGgcuaccGGUGCGGCUGc -3'
miRNA:   3'- gGCG--UCCGGUcgCGCa-----CCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 78982 0.66 0.541447
Target:  5'- gCGUGGcGCCGGCGCccgcucucgcucGUGGCccgGCGGCa- -3'
miRNA:   3'- gGCGUC-CGGUCGCG------------CACCG---CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 19537 0.66 0.541447
Target:  5'- -aGCAGGaCCAcgccGCGCGUGcGC-CAGCg- -3'
miRNA:   3'- ggCGUCC-GGU----CGCGCAC-CGcGUCGac -5'
23561 3' -62.9 NC_005261.1 + 94540 0.66 0.541447
Target:  5'- -gGCAGGCCAGgaccuCGcCGUGGaGCcGCUGc -3'
miRNA:   3'- ggCGUCCGGUC-----GC-GCACCgCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 37598 0.66 0.541447
Target:  5'- gCGCGGGCCGcGCGCcUGuGCG-AGCg- -3'
miRNA:   3'- gGCGUCCGGU-CGCGcAC-CGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 95831 0.66 0.541447
Target:  5'- uCCGC--GCCAaccacGUGCa-GGCGCAGCUGg -3'
miRNA:   3'- -GGCGucCGGU-----CGCGcaCCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 45371 0.66 0.541447
Target:  5'- aCCGCGGGa-GGUGCGgccgGGCccgGgAGCUGg -3'
miRNA:   3'- -GGCGUCCggUCGCGCa---CCG---CgUCGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.